DOI: 10.18129/B9.bioc.oligoClasses    

This is the development version of oligoClasses; for the stable release version, see oligoClasses.

Classes for high-throughput arrays supported by oligo and crlmm

Bioconductor version: Development (3.17)

This package contains class definitions, validity checks, and initialization methods for classes used by the oligo and crlmm packages.

Author: Benilton Carvalho and Robert Scharpf

Maintainer: Benilton Carvalho <beniltoncarvalho at gmail.com> and Robert Scharpf <rscharpf at jhsph.edu>

Citation (from within R, enter citation("oligoClasses")):


To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))

# The following initializes usage of Bioc devel


For older versions of R, please refer to the appropriate Bioconductor release.


PDF   Reference Manual


biocViews Infrastructure, Software
Version 1.61.0
In Bioconductor since BioC 2.1 (R-2.6) (15 years)
License GPL (>= 2)
Depends R (>= 2.14)
Imports BiocGenerics(>= 0.27.1), Biobase(>= 2.17.8), methods, graphics, IRanges(>= 2.5.17), GenomicRanges(>= 1.23.7), SummarizedExperiment, Biostrings(>= 2.23.6), affyio(>= 1.23.2), foreach, BiocManager, utils, S4Vectors(>= 0.9.25), RSQLite, DBI, ff
Suggests hapmapsnp5, hapmapsnp6, pd.genomewidesnp.6, pd.genomewidesnp.5, pd.mapping50k.hind240, pd.mapping50k.xba240, pd.mapping250k.sty, pd.mapping250k.nsp, genomewidesnp6Crlmm (>= 1.0.7), genomewidesnp5Crlmm (>= 1.0.6), RUnit, human370v1cCrlmm, VanillaICE, crlmm
Enhances doMC, doMPI, doSNOW, doParallel, doRedis
Depends On Me cn.farms, crlmm, maEndToEnd, mBPCR, oligo, pd.atdschip.tiling, puma
Imports Me affycoretools, frma, ITALICS, mimager, MinimumDistance, pdInfoBuilder, puma, VanillaICE
Suggests Me hapmapsnp6
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package oligoClasses_1.61.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/oligoClasses
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/oligoClasses
Package Short Url https://bioconductor.org/packages/oligoClasses/
Package Downloads Report Download Stats

Documentation »


R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: