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affyio

This is the development version of affyio; for the stable release version, see affyio.

Tools for parsing Affymetrix data files


Bioconductor version: Development (3.19)

Routines for parsing Affymetrix data files based upon file format information. Primary focus is on accessing the CEL and CDF file formats.

Author: Ben Bolstad <bmb at bmbolstad.com>

Maintainer: Ben Bolstad <bmb at bmbolstad.com>

Citation (from within R, enter citation("affyio")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("affyio")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Details

biocViews DataImport, Infrastructure, Microarray, Software
Version 1.73.0
In Bioconductor since BioC 1.8 (R-2.3) (18 years)
License LGPL (>= 2)
Depends R (>= 2.6.0)
Imports zlibbioc, methods
System Requirements
URL https://github.com/bmbolstad/affyio
See More
Suggests
Linking To
Enhances
Depends On Me makecdfenv, SCAN.UPC
Imports Me affy, affylmGUI, crlmm, ExiMiR, gcrma, oligo, oligoClasses, puma
Suggests Me BufferedMatrixMethods
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package affyio_1.73.0.tar.gz
Windows Binary affyio_1.73.0.zip (64-bit only)
macOS Binary (x86_64) affyio_1.73.0.tgz
macOS Binary (arm64) affyio_1.73.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/affyio
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/affyio
Bioc Package Browser https://code.bioconductor.org/browse/affyio/
Package Short Url https://bioconductor.org/packages/affyio/
Package Downloads Report Download Stats