See download stats for: Bioconductor software packages Bioconductor experiment packages Bioconductor workflow packages

Download stats for Bioconductor annotation packages

This page was generated on 2023-03-30 09:34:05 -0400 (Thu, 30 Mar 2023).

The number reported next to each package name is the download score, that is, the average number of distinct IPs that “hit” the package each month for the last 12 months (not counting the current month).

Top 30

1	GenomeInfoDbData (56079)
2	GO.db (17071)
3	org.Hs.eg.db (14800)
4	DO.db (8740)
5	org.Mm.eg.db (5951)
6	TxDb.Hsapiens.UCSC.hg19.knownGene (4150)
7	HDO.db (2713)
8	BSgenome.Hsapiens.UCSC.hg19 (2594)
9	reactome.db (2328)
10	BSgenome.Hsapiens.UCSC.hg38 (2202)

11	TxDb.Hsapiens.UCSC.hg38.knownGene (1847)
12	EnsDb.Hsapiens.v86 (1419)
13	hgu133plus2.db (1274)
14	TxDb.Mmusculus.UCSC.mm10.knownGene (1272)
15	FDb.InfiniumMethylation.hg19 (1150)
16	IlluminaHumanMethylation450kanno.ilmn12.hg19 (1112)
17	BSgenome.Mmusculus.UCSC.mm10 (1042)
18	org.Rn.eg.db (1014)
19	IlluminaHumanMethylation450kmanifest (974)
20	IlluminaHumanMethylationEPICmanifest (903)

21	IlluminaHumanMethylationEPICanno.ilm10b4.hg19 (875)
22	Homo.sapiens (787)
23	PFAM.db (713)
24	hgu133plus2cdf (712)
25	hgu95av2.db (703)
26	hgu133a.db (659)
27	org.Dm.eg.db (651)
28	EnsDb.Hsapiens.v75 (617)
29	hugene10sttranscriptcluster.db (587)
30	EnsDb.Mmusculus.v79 (506)

All annotation packages

All annotation package stats in one file: annotation_pkg_stats.tab

All annotation package download scores in one file: annotation_pkg_scores.tab

See Download stats for Bioconductor annotation repository (all packages combined)

A

	abind (1)
	adabag (1)
	ade4 (1)
	adegenet (1)
	ADGofTest (1)
	adme16cod (1)
	adme16cod.db (22)
	admiral (1)
	admiral.test (1)
	admiraldev (1)
	admisc (3)
	AER (1)
	affxparser (0)
	affy (1)
	affycoretools (1)
	affyio (1)
	ag (1)
	ag.db (18)
	agahomology (1)
	agcdf (20)
	AgiMicroRna (1)
	agprobe (19)
	agricolae (2)
	AHCytoBands (14)
	AHEnsDbs (19)
	AHLRBaseDbs (16)
	AHMeSHDbs (22)
	AHPathbankDbs (19)
	AHPubMedDbs (18)
	AHWikipathwaysDbs (13)
	airway (0)
	ALDEx2 (1)
	aldvmm (1)
	ALL (3)
	alphashape3d (1)
	alternativeSplicingEvents.hg19 (16)
	alternativeSplicingEvents.hg38 (17)
	AMARETTO (0)

	Amelia (1)
	amgen.okta.client (1)
	ANCOMBC (0)
	annaffy (1)
	annotate (1)
	AnnotationDbi (2)
	AnnotationFilter (1)
	AnnotationForge (1)
	AnnotationHub (1)
	anopheles.db0 (16)
	AnVIL (1)
	apcluster (1)
	ape (1)
	apeglm (1)
	apexcharter (1)
	aplot (2)
	aqp (1)
	arabidopsis.db0 (20)
	argparse (2)
	arm (1)
	aroma.affymetrix (2)
	aroma.apd (2)
	aroma.core (2)
	arrayhelpers (1)
	arrow (3)
	arsenal (1)
	asciicast (1)
	ASExtras4 (1)
	ash (2)
	ashr (0)
	asht (1)
	AsioHeaders (1)
	askpass (1)
	asremlPlus (1)
	assert (1)
	assertive.properties (1)
	assertr (1)
	assertthat (1)

	ATACseqQC (0)
	ATE (1)
	atgenomeatrefseq (1)
	atgenomeatrefseq7cdf (1)
	atgenomeatrefseq7probe (1)
	atgenomeatrefseqcdf (1)
	atgenomeatrefseqprobe (1)
	atgenomeattair (1)
	atgenomeattaircdf (1)
	atgenomeattairprobe (1)
	atgenomeattigr (1)
	atgenomeattigr7cdf (1)
	atgenomeattigr7probe (1)
	atgenomeattigrcdf (1)
	atgenomeattigrprobe (1)
	ath1121501 (1)
	ath1121501.db (54)
	ath1121501cdf (50)
	ath1121501probe (20)
	ath1atrefseq (1)
	ath1atrefseq7cdf (1)
	ath1atrefseq7probe (1)
	ath1atrefseqcdf (1)
	ath1atrefseqprobe (1)
	ath1attair (1)
	ath1attaircdf (1)
	ath1attairprobe (1)
	ath1attigr (1)
	ath1attigr7cdf (1)
	ath1attigr7probe (1)
	ath1attigrcdf (1)
	ath1attigrprobe (1)
	athhomology (1)
	AUCell (1)
	av (1)
	aws.s3 (2)
	aws.signature (2)

B

	babelgene (1)
	babelmixr2 (1)
	backports (9)
	badger (1)
	baguette (1)
	ballgown (1)
	BANDITS (0)
	barley1cdf (14)
	barley1probe (20)
	BART (1)
	base (0)
	base64enc (1)
	base64url (1)
	batchelor (1)
	BatchJobs (1)
	batchtools (1)
	BayesFactor (0)
	bayesmeta (1)
	bayesplot (2)
	bayestestR (1)
	baySeq (1)
	BB (1)
	BBmisc (1)
	bbmle (1)
	bbr (1)
	bcellViper (0)
	bdsmatrix (1)
	beachmat (1)
	beeswarm (1)
	bench (1)
	benchmarkme (1)
	bezier (1)
	BH (13)
	BiasedUrn (2)
	bibtex (1)
	biganalytics (1)
	bigassertr (1)
	bigD (1)
	biglm (1)
	bigmemory (1)
	bigparallelr (1)
	bigreadr (1)
	bigrquery (2)
	bigsnpr (0)
	bigsparser (0)
	bigstatsr (0)
	bigutils (0)
	bigutilsr (1)
	binom (1)
	binr (1)
	BioBase (0)
	Biobase (2)
	bioc::GenomeInfoDbData (1)
	BiocCheck (1)
	BiocFileCache (1)
	BiocGenerics (2)
	BiocInstaller (1)
	BiocIO (1)
	BiocManager (8)
	BiocNeighbors (1)
	Bioconductor (1)
	BiocParallel (3)
	BiocSingular (1)
	BiocSklearn (0)
	BiocVersion (6)
	biocViews (1)
	BiocWorkflowTools (0)
	biomaRt (1)
	biomartr (1)
	biomformat (1)
	biostatUtil (1)
	Biostrings (4)
	BioVersion (1)
	biovizBase (1)
	bit (4)
	bit64 (2)
	bitops (1)
	bizdays (0)
	BlakerCI (1)
	blastula (1)
	blavaan (1)
	blme (2)
	blob (4)
	blockcluster (1)
	blogdown (1)
	BMA (1)
	bnlearn (1)
	BOIN (1)

	bookdown (6)
	boot (1)
	bootstrap (1)
	bovine.db (21)
	bovine.db0 (14)
	bovinecdf (17)
	bovineprobe (15)
	bpcp (1)
	brave (1)
	brew (11)
	brglm (1)
	brglm2 (0)
	bridgesampling (1)
	brio (1)
	brms (1)
	Brobdingnag (1)
	broman (1)
	broom (4)
	broom.helpers (1)
	broom.mixed (1)
	bs4Dash (1)
	BSgenome (1)
	BSgenome.Alyrata.JGI.v1 (13)
	BSgenome.Amellifera.BeeBase.assembly4 (14)
	BSgenome.Amellifera.NCBI.AmelHAv3.1 (13)
	BSgenome.Amellifera.UCSC.apiMel2 (13)
	BSgenome.Amellifera.UCSC.apiMel2.masked (15)
	BSgenome.Aofficinalis.NCBI.V1 (12)
	BSgenome.Athaliana.TAIR.01222004 (1)
	BSgenome.Athaliana.TAIR.04232008 (16)
	BSgenome.Athaliana.TAIR.TAIR9 (56)
	BSgenome.Btaurus.UCSC.bosTau3 (16)
	BSgenome.Btaurus.UCSC.bosTau3.masked (15)
	BSgenome.Btaurus.UCSC.bosTau4 (13)
	BSgenome.Btaurus.UCSC.bosTau4.masked (15)
	BSgenome.Btaurus.UCSC.bosTau6 (22)
	BSgenome.Btaurus.UCSC.bosTau6.masked (22)
	BSgenome.Btaurus.UCSC.bosTau8 (18)
	BSgenome.Btaurus.UCSC.bosTau9 (23)
	BSgenome.Btaurus.UCSC.bosTau9.masked (11)
	BSgenome.Carietinum.NCBI.v1 (13)
	BSgenome.Celegans.UCSC.ce10 (29)
	BSgenome.Celegans.UCSC.ce11 (101)
	BSgenome.Celegans.UCSC.ce2 (271)
	BSgenome.Celegans.UCSC.ce6 (15)
	BSgenome.Cfamiliaris.UCSC.canFam2 (17)
	BSgenome.Cfamiliaris.UCSC.canFam2.masked (15)
	BSgenome.Cfamiliaris.UCSC.canFam3 (112)
	BSgenome.Cfamiliaris.UCSC.canFam3.masked (17)
	BSgenome.Cjacchus.UCSC.calJac3 (16)
	BSgenome.Cjacchus.UCSC.calJac4 (11)
	BSgenome.CneoformansVarGrubiiKN99.NCBI.ASM221672v1 (11)
	BSgenome.Creinhardtii.JGI.v5.6 (12)
	BSgenome.Dmelanogaster.BDGP.Release5 (1)
	BSgenome.Dmelanogaster.FlyBase.r51 (1)
	BSgenome.Dmelanogaster.UCSC.dm2 (30)
	BSgenome.Dmelanogaster.UCSC.dm2.masked (17)
	BSgenome.Dmelanogaster.UCSC.dm3 (179)
	BSgenome.Dmelanogaster.UCSC.dm3.masked (15)
	BSgenome.Dmelanogaster.UCSC.dm6 (86)
	BSgenome.Drerio.UCSC.danRer10 (58)
	BSgenome.Drerio.UCSC.danRer11 (38)
	BSgenome.Drerio.UCSC.danRer5 (12)
	BSgenome.Drerio.UCSC.danRer5.masked (15)
	BSgenome.Drerio.UCSC.danRer6 (13)
	bsgenome.drerio.ucsc.danrer6 (0)
	BSgenome.Drerio.UCSC.danRer6.masked (12)
	BSgenome.Drerio.UCSC.danRer7 (50)
	BSgenome.Drerio.UCSC.danRer7.masked (13)
	BSgenome.Dvirilis.Ensembl.dvircaf1 (12)
	BSgenome.Ecoli.NCBI.20080805 (112)
	BSgenome.Gaculeatus.UCSC.gasAcu1 (14)
	BSgenome.Gaculeatus.UCSC.gasAcu1.masked (15)
	BSgenome.Gasterosteus.UCSC.gasAcu1 (0)
	BSgenome.Ggallus.UCSC.galGal3 (34)
	bsgenome.ggallus.ucsc.galgal3 (0)
	BSgenome.Ggallus.UCSC.galGal3.masked (16)
	BSgenome.Ggallus.UCSC.galGal4 (18)
	BSgenome.Ggallus.UCSC.galGal4.masked (12)
	BSgenome.Ggallus.UCSC.galGal5 (16)
	BSgenome.Ggallus.UCSC.galGal6 (24)
	BSgenome.Gmax.NCBI.Gmv40 (10)
	BSgenome.Hsapiens.1000genomes.hs37d5 (311)
	BSgenome.Hsapiens.NCBI.b36v3 (1)
	BSgenome.Hsapiens.NCBI.GRCh38 (449)
	BSgenome.Hsapiens.NCBI.T2T.CHM13v2.0 (19)
	BSgenome.Hsapiens.UCSC.hg1 (1)
	BSgenome.Hsapiens.UCSC.hg16 (1)

	BSgenome.Hsapiens.UCSC.hg17 (18)
	BSgenome.Hsapiens.UCSC.hg17.masked (16)
	BSgenome.Hsapiens.UCSC.hg18 (146)
	BSgenome.Hsapiens.UCSC.hg18.masked (35)
	BSgenome.Hsapiens.UCSC.hg19 (2594)
	bsgenome.hsapiens.ucsc.hg19 (1)
	BSgenome.Hsapiens.UCSC.hg19.masked (104)
	BSgenome.Hsapiens.UCSC.hg38 (2202)
	BSgenome.Hsapiens.UCSC.hg38.dbSNP151.major (16)
	BSgenome.Hsapiens.UCSC.hg38.dbSNP151.minor (19)
	BSgenome.Hsapiens.UCSC.hg38.masked (124)
	BSgenome.Hsapiens.UCSC.hs1 (3)
	BSgenome.Hsapiens.UCSC.mm10 (1)
	BSgenome.Mdomestica.UCSC.monDom5 (15)
	BSgenome.Mfascicularis.NCBI.5.0 (21)
	BSgenome.Mfascicularis.NCBI.6.0 (14)
	BSgenome.Mfuro.UCSC.musFur1 (12)
	BSgenome.Mmulatta.UCSC.rheMac10 (29)
	BSgenome.Mmulatta.UCSC.rheMac2 (17)
	bsgenome.mmulatta.ucsc.rhemac2 (0)
	BSgenome.Mmulatta.UCSC.rheMac2.masked (16)
	BSgenome.Mmulatta.UCSC.rheMac3 (16)
	BSgenome.Mmulatta.UCSC.rheMac3.masked (16)
	BSgenome.Mmulatta.UCSC.rheMac8 (13)
	BSgenome.Mmusculus.UCSC.mm10 (1042)
	BSgenome.Mmusculus.UCSC.mm10.masked (52)
	BSgenome.Mmusculus.UCSC.mm39 (61)
	BSgenome.Mmusculus.UCSC.mm6 (1)
	BSgenome.Mmusculus.UCSC.mm7 (1)
	BSgenome.Mmusculus.UCSC.mm8 (28)
	BSgenome.Mmusculus.UCSC.mm8.masked (22)
	BSgenome.Mmusculus.UCSC.mm9 (177)
	BSgenome.Mmusculus.UCSC.mm9.masked (27)
	BSgenome.Osativa.MSU.MSU7 (24)
	BSgenome.Ppaniscus.UCSC.panPan1 (15)
	BSgenome.Ppaniscus.UCSC.panPan2 (15)
	BSgenome.Ptroglodytes.UCSC.panTro2 (11)
	BSgenome.Ptroglodytes.UCSC.panTro2.masked (11)
	BSgenome.Ptroglodytes.UCSC.panTro3 (16)
	BSgenome.Ptroglodytes.UCSC.panTro3.masked (11)
	BSgenome.Ptroglodytes.UCSC.panTro5 (16)
	BSgenome.Ptroglodytes.UCSC.panTro6 (17)
	BSgenome.Rnorvegicus.UCSC.rn4 (20)
	BSgenome.Rnorvegicus.UCSC.rn4.masked (11)
	BSgenome.Rnorvegicus.UCSC.rn5 (63)
	BSgenome.Rnorvegicus.UCSC.rn5.masked (22)
	BSgenome.Rnorvegicus.UCSC.rn6 (37)
	BSgenome.Rnorvegicus.UCSC.rn7 (20)
	BSgenome.Scerevisiae.UCSC.sacCer1 (76)
	BSgenome.Scerevisiae.UCSC.sacCer2 (171)
	BSgenome.Scerevisiae.UCSC.sacCer3 (122)
	BSgenome.Sscrofa.UCSC.susScr11 (30)
	BSgenome.Sscrofa.UCSC.susScr3 (11)
	BSgenome.Sscrofa.UCSC.susScr3.masked (14)
	BSgenome.Tgondii.ToxoDB.7.0 (17)
	BSgenome.Tguttata.UCSC.taeGut1 (12)
	BSgenome.Tguttata.UCSC.taeGut1.masked (13)
	BSgenome.Tguttata.UCSC.taeGut2 (15)
	BSgenome.Vvinifera.URGI.IGGP12Xv0 (11)
	BSgenome.Vvinifera.URGI.IGGP12Xv2 (11)
	BSgenome.Vvinifera.URGI.IGGP8X (11)
	bslib (5)
	bsplus (1)
	bsubtiliscdf (15)
	bsubtilisprobe (20)
	btahomology (1)
	btbovinebtense (1)
	btbovinebtensecdf (1)
	btbovinebtenseprobe (1)
	btbovinebtensg (1)
	btbovinebtensgcdf (1)
	btbovinebtensgprobe (1)
	btbovinebtenst (1)
	btbovinebtenstcdf (1)
	btbovinebtenstprobe (1)
	btbovinebtentrezg (1)
	btbovinebtentrezgcdf (1)
	btbovinebtentrezgprobe (1)
	btbovinebtrefseq (1)
	btbovinebtrefseqcdf (1)
	btbovinebtrefseqprobe (1)
	btbovinebtug (1)
	btbovinebtugcdf (1)
	btbovinebtugprobe (1)
	bumphunter (1)
	butcher (1)
	bvls (1)

C

	C50 (1)
	cache (1)
	cachem (1)
	Cairo (1)
	callr (13)
	CAMERA (1)
	campsismod (1)
	CancerSubtypes (0)
	canine.db (18)
	canine.db0 (12)
	canine2 (1)
	canine2.db (18)
	canine2cdf (16)
	canine2probe (19)
	caninecdf (15)
	canineprobe (19)
	car (3)
	carData (1)
	caret (3)
	castor (1)
	CATALYST (0)
	Category (1)
	caTools (1)
	CBPS (1)
	ccaPP (1)
	ccdata (3)
	celegans (1)
	celegans.db (30)
	celeganscdf (20)
	CelegansGenome.ce2 (1)
	celegansprobe (17)
	celhomology (1)
	celldex (0)
	CellMixS (0)
	cellranger (1)
	cem (1)
	CEMiTool (0)
	cfahomology (1)
	cfcanine2cfense (1)
	cfcanine2cfense7cdf (1)
	cfcanine2cfense7probe (1)
	cfcanine2cfensecdf (1)
	cfcanine2cfenseprobe (1)
	cfcanine2cfensg (1)
	cfcanine2cfensg7cdf (1)
	cfcanine2cfensg7probe (1)
	cfcanine2cfensgcdf (1)
	cfcanine2cfensgprobe (1)
	cfcanine2cfenst (1)
	cfcanine2cfenst7cdf (1)
	cfcanine2cfenst7probe (1)
	cfcanine2cfenstcdf (1)
	cfcanine2cfenstprobe (1)
	cfcanine2cfentrezg (1)
	cfcanine2cfentrezg7cdf (1)
	cfcanine2cfentrezg7probe (1)
	cfcanine2cfentrezgcdf (1)
	cfcanine2cfentrezgprobe (1)
	cfcanine2cfrefseq (1)
	cfcanine2cfrefseq7cdf (1)
	cfcanine2cfrefseq7probe (1)

	cfcanine2cfrefseqcdf (1)
	cfcanine2cfrefseqprobe (1)
	cfcanine2cfug (1)
	cfcanine2cfug7cdf (1)
	cfcanine2cfug7probe (1)
	cfcanine2cfugcdf (1)
	cfcanine2cfugprobe (1)
	cfcanine2cfvegat (1)
	cfcanine2cfvegatcdf (1)
	cfcanine2cfvegatprobe (1)
	cgdsr (0)
	CGHbase (1)
	ChAMP (1)
	ChAMPdata (1)
	changepoint (1)
	checkmate (1)
	ChemmineDrugs (30)
	chicken (1)
	chicken.db (21)
	chicken.db0 (13)
	chickencdf (13)
	chickenprobe (12)
	chimp.db0 (12)
	ChIPseeker (1)
	chromhmmData (31)
	chron (1)
	cinhomology (1)
	circlesize (0)
	circlize (1)
	citruscdf (14)
	citrusprobe (11)
	Ckmeans.1d.dp (1)
	clariomdhumanprobeset.db (23)
	clariomdhumantranscriptcluster (1)
	clariomdhumantranscriptcluster.db (39)
	clariomshumancdf (1)
	clariomshumanhttranscriptcluster.db (24)
	clariomshumantranscriptcluster.db (35)
	clariomsmousehttranscriptcluster.db (15)
	clariomsmousetranscriptcluster.db (32)
	clariomsrathttranscriptcluster.db (17)
	clariomsrattranscriptcluster.db (19)
	class (5)
	classInt (2)
	cli (6)
	clinfun (0)
	clinPK (1)
	clipr (6)
	cliqueMS (0)
	clock (1)
	clue (3)
	CluMSID (0)
	cluster (5)
	clusterCrit (1)
	clustermq (1)
	clusterprofielr (1)
	clusterProfiler (1)
	ClusterR (1)
	clusthaplo (1)
	cMAP (38)
	cmdstanr (1)

	cmprsk (1)
	cnvGSA (0)
	cobalt (1)
	coda (1)
	codetools (5)
	coin (1)
	collapse (1)
	collections (1)
	coloc (3)
	colorfulVennPlot (1)
	colorRamps (2)
	colorspace (5)
	colourpicker (1)
	colourvalues (1)
	coMET (0)
	commentr (1)
	CommonJavaJars (1)
	commonmark (12)
	compiler (0)
	ComplexHeatmap (3)
	compositions (1)
	CompQuadForm (1)
	config (1)
	conflicted (2)
	connectwidgets (1)
	conquer (1)
	consort (1)
	copula (1)
	coro (1)
	corpcor (1)
	corrplot (1)
	corrr (1)
	cosmosR (0)
	cottoncdf (10)
	cottonprobe (16)
	covr (9)
	cowplot (1)
	cpp11 (5)
	crayon (7)
	creatr (1)
	credentials (1)
	crosstalk (10)
	crrri (1)
	crrry (1)
	crul (1)
	csv (1)
	CTCF (19)
	cubature (1)
	cubelyr (1)
	Cubist (1)
	cummeRbund (1)
	curatedMetagenomicData (1)
	curl (11)
	CVST (1)
	CVXR (1)
	cxAnalysis (1)
	cyclocomp (1)
	cyp450cdf (11)
	cytolib (1)

D

	d3r (0)
	dada2 (1)
	dae (1)
	data.table (10)
	data.tree (1)
	datamods (1)
	datapipeline (1)
	datasets (0)
	datawizard (1)
	dbarts (1)
	DBI (4)
	DBItest (1)
	dbplyr (3)
	dbscan (1)
	ddalpha (1)
	DeconRNASeq (1)
	decoupleR (1)
	DEGseq (1)
	DelayedArray (1)
	DelayedMatrixStats (2)
	deldir (1)
	dendextend (2)
	dendsort (1)
	densityClust (1)
	DEoptim (1)
	DEoptimR (1)
	derfinder (1)
	derfinderHelper (1)
	Deriv (1)
	desc (11)
	DescTools (1)
	DESeq (0)
	DESeq2 (1)
	deSolve (1)
	devtools (11)
	DEXICA (0)
	DEXSeq (1)
	dfidx (1)
	DHARMa (1)
	DiagrammeR (1)
	dials (2)
	DiceDesign (1)
	DiceKriging (1)
	diceR (1)
	dichromat (1)
	diffdf (0)
	diffobj (1)
	digest (13)
	dimRed (1)
	directlabels (1)
	DirichletMultinomial (1)
	disk.frame (0)
	distill (1)
	distr (1)
	distributional (2)
	dittodb (1)
	dittoSeq (1)
	dlstats (1)
	dm (1)
	dmdrosophila2dmense (1)
	dmdrosophila2dmense7cdf (1)
	dmdrosophila2dmense7probe (1)
	dmdrosophila2dmensecdf (1)
	dmdrosophila2dmenseprobe (1)

	dmdrosophila2dmensg (1)
	dmdrosophila2dmensg7cdf (1)
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	hs133bhsensg (1)
	hs133bhsensg7cdf (1)
	hs133bhsensg7probe (1)
	hs133bhsensgcdf (1)
	hs133bhsensgprobe (1)
	hs133bhsenst (1)
	hs133bhsenst7cdf (1)
	hs133bhsenst7probe (1)
	hs133bhsenstcdf (1)
	hs133bhsenstprobe (1)
	hs133bhsentrezg (1)
	hs133bhsentrezg7cdf (1)
	hs133bhsentrezg7probe (1)
	hs133bhsentrezgcdf (1)
	hs133bhsentrezgprobe (1)
	hs133bhsrefseq (1)
	hs133bhsrefseq7cdf (1)
	hs133bhsrefseq7probe (1)
	hs133bhsrefseqcdf (1)
	hs133bhsrefseqprobe (1)
	hs133bhsug (1)
	hs133bhsug7cdf (1)
	hs133bhsug7probe (1)
	hs133bhsugcdf (1)
	hs133bhsugprobe (1)
	hs133bhsvegae (1)
	hs133bhsvegaecdf (1)
	hs133bhsvegaeprobe (1)
	hs133bhsvegag (1)
	hs133bhsvegagcdf (1)
	hs133bhsvegagprobe (1)
	hs133bhsvegat (1)
	hs133bhsvegatcdf (1)
	hs133bhsvegatprobe (1)
	hs133bptense (1)
	hs133bptense7cdf (1)
	hs133bptense7probe (1)
	hs133bptensecdf (1)
	hs133bptenseprobe (1)
	hs133bptensg (1)
	hs133bptensg7cdf (1)
	hs133bptensg7probe (1)
	hs133bptensgcdf (1)
	hs133bptensgprobe (1)
	hs133bptenst (1)
	hs133bptenstcdf (1)
	hs133bptenstprobe (1)
	hs133bptentrezg (1)
	hs133bptentrezgcdf (1)
	hs133bptentrezgprobe (1)
	hs133bptrefseq (1)
	hs133bptrefseqcdf (1)
	hs133bptrefseqprobe (1)
	hs133phsense (1)
	hs133phsense7cdf (1)
	hs133phsense7probe (1)
	hs133phsensecdf (1)
	hs133phsenseprobe (1)
	hs133phsensg (1)
	hs133phsensg7cdf (1)
	hs133phsensg7probe (1)
	hs133phsensgcdf (1)
	hs133phsensgprobe (1)
	hs133phsenst (1)
	hs133phsenst7cdf (1)
	hs133phsenst7probe (1)
	hs133phsenstcdf (1)
	hs133phsenstprobe (1)
	hs133phsentrezg (1)
	hs133phsentrezg7cdf (1)
	hs133phsentrezg7probe (1)
	hs133phsentrezgcdf (1)
	hs133phsentrezgprobe (1)
	hs133phsrefseq (1)
	hs133phsrefseq7cdf (1)
	hs133phsrefseq7probe (1)
	hs133phsrefseqcdf (1)
	hs133phsrefseqprobe (1)
	hs133phsug (1)
	hs133phsug7cdf (1)
	hs133phsug7probe (1)
	hs133phsugcdf (1)
	hs133phsugprobe (1)
	hs133phsvegae (1)
	hs133phsvegaecdf (1)
	hs133phsvegaeprobe (1)
	hs133phsvegag (1)
	hs133phsvegagcdf (1)
	hs133phsvegagprobe (1)
	hs133phsvegat (1)
	hs133phsvegatcdf (1)
	hs133phsvegatprobe (1)
	hs133pptense (1)
	hs133pptense7cdf (1)
	hs133pptense7probe (1)
	hs133pptensecdf (1)
	hs133pptenseprobe (1)
	hs133pptensg (1)
	hs133pptensg7cdf (1)
	hs133pptensg7probe (1)
	hs133pptensgcdf (1)
	hs133pptensgprobe (1)
	hs133pptenst (1)
	hs133pptenstcdf (1)
	hs133pptenstprobe (1)
	hs133pptentrezg (1)
	hs133pptentrezgcdf (1)
	hs133pptentrezgprobe (1)
	hs133pptrefseq (1)
	hs133pptrefseqcdf (1)
	hs133pptrefseqprobe (1)
	hs133xhsense (1)
	hs133xhsense7cdf (1)
	hs133xhsense7probe (1)
	hs133xhsensecdf (1)
	hs133xhsenseprobe (1)
	hs133xhsensg (1)
	hs133xhsensg7cdf (1)
	hs133xhsensg7probe (1)
	hs133xhsensgcdf (1)
	hs133xhsensgprobe (1)
	hs133xhsenst (1)
	hs133xhsenst7cdf (1)
	hs133xhsenst7probe (1)
	hs133xhsenstcdf (1)
	hs133xhsenstprobe (1)
	hs133xhsentrezg (1)
	hs133xhsentrezg7cdf (1)
	hs133xhsentrezg7probe (1)
	hs133xhsentrezgcdf (1)
	hs133xhsentrezgprobe (1)
	hs133xhsrefseq (1)
	hs133xhsrefseq7cdf (1)
	hs133xhsrefseq7probe (1)
	hs133xhsrefseqcdf (1)
	hs133xhsrefseqprobe (1)
	hs133xhsug (1)
	hs133xhsug7cdf (1)
	hs133xhsug7probe (1)
	hs133xhsugcdf (1)
	hs133xhsugprobe (1)
	hs133xhsvegae (1)
	hs133xhsvegaecdf (1)
	hs133xhsvegaeprobe (1)
	hs133xhsvegag (1)
	hs133xhsvegagcdf (1)
	hs133xhsvegagprobe (1)
	hs133xhsvegat (1)
	hs133xhsvegatcdf (1)
	hs133xhsvegatprobe (1)
	hs133xptense (1)
	hs133xptense7cdf (1)
	hs133xptense7probe (1)
	hs133xptensecdf (1)
	hs133xptenseprobe (1)
	hs133xptensg (1)
	hs133xptensg7cdf (1)
	hs133xptensg7probe (1)
	hs133xptensgcdf (1)
	hs133xptensgprobe (1)
	hs133xptenst (1)
	hs133xptenstcdf (1)
	hs133xptenstprobe (1)
	hs133xptentrezg (1)
	hs133xptentrezgcdf (1)
	hs133xptentrezgprobe (1)
	hs133xptrefseq (1)
	hs133xptrefseqcdf (1)
	hs133xptrefseqprobe (1)
	hs25kresogen (1)
	hs25kresogen.db (19)
	Hs6UG171.db (16)
	hs95av2hsense (1)
	hs95av2hsense7cdf (1)
	hs95av2hsense7probe (1)
	hs95av2hsensecdf (1)
	hs95av2hsenseprobe (1)
	hs95av2hsensg (1)
	hs95av2hsensg7cdf (1)
	hs95av2hsensg7probe (1)
	hs95av2hsensgcdf (1)
	hs95av2hsensgprobe (1)
	hs95av2hsenst (1)
	hs95av2hsenst7cdf (1)
	hs95av2hsenst7probe (1)
	hs95av2hsenstcdf (1)
	hs95av2hsenstprobe (1)
	hs95av2hsentrezg (1)
	hs95av2hsentrezg7cdf (1)
	hs95av2hsentrezg7probe (1)
	hs95av2hsentrezgcdf (1)
	hs95av2hsentrezgprobe (1)
	hs95av2hsrefseq (1)
	hs95av2hsrefseq7cdf (1)
	hs95av2hsrefseq7probe (1)
	hs95av2hsrefseqcdf (1)
	hs95av2hsrefseqprobe (1)
	hs95av2hsug (1)
	hs95av2hsug7cdf (1)
	hs95av2hsug7probe (1)
	hs95av2hsugcdf (1)
	hs95av2hsugprobe (1)
	hs95av2hsvegae (1)
	hs95av2hsvegaecdf (1)
	hs95av2hsvegaeprobe (1)
	hs95av2hsvegag (1)
	hs95av2hsvegagcdf (1)
	hs95av2hsvegagprobe (1)
	hs95av2hsvegat (1)
	hs95av2hsvegatcdf (1)
	hs95av2hsvegatprobe (1)
	hs95av2ptense (1)
	hs95av2ptense7cdf (1)
	hs95av2ptense7probe (1)
	hs95av2ptensecdf (1)
	hs95av2ptenseprobe (1)
	hs95av2ptensg (1)
	hs95av2ptensg7cdf (1)
	hs95av2ptensg7probe (1)
	hs95av2ptensgcdf (1)
	hs95av2ptensgprobe (1)
	hs95av2ptenst (1)

	hs95av2ptenstcdf (1)
	hs95av2ptenstprobe (1)
	hs95av2ptentrezg (1)
	hs95av2ptentrezgcdf (1)
	hs95av2ptentrezgprobe (1)
	hs95av2ptrefseq (1)
	hs95av2ptrefseqcdf (1)
	hs95av2ptrefseqprobe (1)
	HsAgilentDesign026652.db (38)
	hsahomology (2)
	HsapiensGenome.hg16 (1)
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	HsapiensGenome.hg18 (1)
	hsex10stv2hsense (1)
	hsex10stv2hsense7cdf (1)
	hsex10stv2hsense7probe (1)
	hsex10stv2hsensecdf (1)
	hsex10stv2hsenseprobe (1)
	hsex10stv2hsensg (1)
	hsex10stv2hsensg7cdf (1)
	hsex10stv2hsensg7probe (1)
	hsex10stv2hsensgcdf (1)
	hsex10stv2hsensgprobe (1)
	hsex10stv2hsenst (1)
	hsex10stv2hsenst7cdf (1)
	hsex10stv2hsenst7probe (1)
	hsex10stv2hsenstcdf (1)
	hsex10stv2hsenstprobe (1)
	hsex10stv2hsentrezg (1)
	hsex10stv2hsentrezg7cdf (1)
	hsex10stv2hsentrezg7probe (1)
	hsex10stv2hsentrezgcdf (1)
	hsex10stv2hsentrezgprobe (1)
	hsex10stv2hsrefseq (1)
	hsex10stv2hsrefseq7cdf (1)
	hsex10stv2hsrefseq7probe (1)
	hsex10stv2hsrefseqcdf (1)
	hsex10stv2hsrefseqprobe (1)
	hsex10stv2hsug (1)
	hsex10stv2hsug7cdf (1)
	hsex10stv2hsug7probe (1)
	hsex10stv2hsugcdf (1)
	hsex10stv2hsugprobe (1)
	hsex10stv2ptense (1)
	hsex10stv2ptense7cdf (1)
	hsex10stv2ptense7probe (1)
	hsex10stv2ptensecdf (1)
	hsex10stv2ptenseprobe (1)
	hsex10stv2ptensg (1)
	hsex10stv2ptensg7cdf (1)
	hsex10stv2ptensg7probe (1)
	hsex10stv2ptensgcdf (1)
	hsex10stv2ptensgprobe (1)
	hsex10stv2ptenst (1)
	hsex10stv2ptenstcdf (1)
	hsex10stv2ptenstprobe (1)
	hsex10stv2ptentrezg (1)
	hsex10stv2ptentrezgcdf (1)
	hsex10stv2ptentrezgprobe (1)
	hsfocushsense (1)
	hsfocushsense7cdf (1)
	hsfocushsense7probe (1)
	hsfocushsensecdf (1)
	hsfocushsenseprobe (1)
	hsfocushsensg (1)
	hsfocushsensg7cdf (1)
	hsfocushsensg7probe (1)
	hsfocushsensgcdf (1)
	hsfocushsensgprobe (1)
	hsfocushsenst (1)
	hsfocushsenst7cdf (1)
	hsfocushsenst7probe (1)
	hsfocushsenstcdf (1)
	hsfocushsenstprobe (1)
	hsfocushsentrezg (1)
	hsfocushsentrezg7cdf (1)
	hsfocushsentrezg7probe (1)
	hsfocushsentrezgcdf (1)
	hsfocushsentrezgprobe (1)
	hsfocushsrefseq (1)
	hsfocushsrefseq7cdf (1)
	hsfocushsrefseq7probe (1)
	hsfocushsrefseqcdf (1)
	hsfocushsrefseqprobe (1)
	hsfocushsug (1)
	hsfocushsug7cdf (1)
	hsfocushsug7probe (1)
	hsfocushsugcdf (1)
	hsfocushsugprobe (1)
	hsfocushsvegae (1)
	hsfocushsvegaecdf (1)
	hsfocushsvegaeprobe (1)
	hsfocushsvegag (1)
	hsfocushsvegagcdf (1)
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	hsfocushsvegat (1)
	hsfocushsvegatcdf (1)
	hsfocushsvegatprobe (1)
	hsfocusptense (1)
	hsfocusptense7cdf (1)
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	hsfocusptensecdf (1)
	hsfocusptenseprobe (1)
	hsfocusptensg (1)
	hsfocusptensg7cdf (1)
	hsfocusptensg7probe (1)
	hsfocusptensgcdf (1)
	hsfocusptensgprobe (1)
	hsfocusptenst (1)
	hsfocusptenstcdf (1)
	hsfocusptenstprobe (1)
	hsfocusptentrezg (1)
	hsfocusptentrezgcdf (1)
	hsfocusptentrezgprobe (1)
	hsfocusptrefseq (1)
	hsfocusptrefseqcdf (1)
	hsfocusptrefseqprobe (1)
	Hspec (14)
	hspeccdf (9)
	hta20probeset.db (19)
	hta20stprobeset.db (1)
	hta20sttranscriptcluster.db (1)
	hta20transcriptcluster.db (40)
	hthgu133a.db (93)
	hthgu133acdf (31)
	hthgu133afrmavecs (16)
	hthgu133aprobe (21)
	hthgu133b.db (21)
	hthgu133bcdf (15)
	hthgu133bprobe (17)
	hthgu133plusa.db (11)
	hthgu133plusb.db (9)
	hthgu133pluspm.db (15)
	hthgu133pluspmcdf (35)
	hthgu133pluspmprobe (17)
	htmg430a.db (10)
	htmg430acdf (11)
	htmg430aprobe (16)
	htmg430b.db (9)
	htmg430bcdf (14)
	htmg430bprobe (18)
	htmg430pm.db (15)
	htmg430pmcdf (15)
	htmg430pmprobe (11)
	htmlTable (2)
	htmltools (12)
	htmlwidgets (11)
	htrat230pm.db (9)
	htrat230pmcdf (13)
	htrat230pmprobe (13)
	htratfocus.db (11)
	htratfocuscdf (17)
	htratfocusprobe (14)
	httpcode (1)
	httpgd (1)
	httptest (1)
	httpuv (5)
	httr (13)
	httr2 (1)
	hu35ksuba (2)
	hu35ksuba.db (21)
	hu35ksubacdf (11)
	hu35ksubaprobe (15)
	hu35ksubb (2)
	hu35ksubb.db (19)
	hu35ksubbcdf (19)
	hu35ksubbprobe (11)
	hu35ksubc (2)
	hu35ksubc.db (17)
	hu35ksubccdf (14)
	hu35ksubcprobe (15)
	hu35ksubd (2)
	hu35ksubd.db (20)
	hu35ksubdcdf (15)
	hu35ksubdprobe (14)
	hu6800 (2)
	hu6800.db (98)
	hu6800cdf (20)
	hu6800probe (16)
	hu6800subacdf (15)
	hu6800subbcdf (10)
	hu6800subccdf (15)
	hu6800subdcdf (14)
	huex.1.0.st.v2frmavecs (11)
	huex10stprobeset.db (15)
	huex10sttranscriptcluster.db (34)
	HuExExonProbesetLocation (11)
	HuExExonProbesetLocationHg18 (9)
	HuExExonProbesetLocationHg19 (10)
	huexexonprobesetlocationhg19 (0)
	hugene.1.0.st.v1frmavecs (19)
	hugene10st.db (1)
	hugene10stprobeset.db (34)
	hugene10sttranscriptcluster.db (587)
	hugene10stv1.r3cdf (1)
	hugene10stv1cdf (113)
	hugene10stv1probe (26)
	hugene11stprobeset.db (14)
	hugene11sttranscriptcluster.db (62)
	hugene20stprobeset.db (19)
	hugene20sttranscriptcluster.db (52)
	hugene21stprobeset.db (17)
	hugene21sttranscriptcluster.db (24)
	human.db0 (65)
	human1mduov3bCrlmm (12)
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	human370quadv3cCrlmm (8)
	human370v1cCrlmm (22)
	human550v3bCrlmm (9)
	human610quadv1bCrlmm (19)
	human650v3aCrlmm (9)
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	humanCHRLOC (39)
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	humanomni25quadv1bCrlmm (12)
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	humanomniexpress12v1bCrlmm (8)
	hunspell (1)
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	HuO22.db (15)
	huxtable (1)
	hvuhomology (1)
	hwgcod (2)
	hwgcod.db (16)
	hwriter (1)

I

	ica (1)
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	IlluminaHumanMethylation450k.db (9)
	IlluminaHumanMethylation450kanno.ilmn12.hg19 (1112)
	IlluminaHumanMethylation450kannotation.ilmn.v1.2 (1)
	IlluminaHumanMethylation450kmanifest (974)
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	illuminahumanmethylation450kprobe (0)
	IlluminaHumanMethylationEPICanno.ilm10b2.hg19 (252)
	IlluminaHumanMethylationEPICanno.ilm10b3.hg19 (24)
	IlluminaHumanMethylationEPICanno.ilm10b4.hg19 (875)
	IlluminaHumanMethylationEPICmanifest (903)
	illuminaHumanv1 (1)
	illuminaHumanv1.db (45)
	illuminaHumanv1BeadID.db (1)
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	illuminaHumanv2 (1)
	illuminaHumanv2.db (67)
	illuminaHumanv2BeadID.db (16)
	illuminaHumanv2ProbeID.db (1)

	illuminaHumanv3.db (140)
	illuminaHumanv3BeadID.db (1)
	illuminaHumanv3ProbeID.db (1)
	illuminaHumanv4.db (254)
	illuminaHumanv4BeadID.db (1)
	illuminaHumanWGDASLv3.db (15)
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	illuminaio (1)
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	illuminaMousev1.db (26)
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	illuminaMousev1p1 (1)
	illuminaMousev1p1.db (27)
	illuminaMousev1p1BeadID.db (1)
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	illuminaMousev2.db (73)
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	illuminaRatv1 (1)
	illuminaRatv1.db (28)
	illuminaRatv1BeadID.db (1)
	illuminaRatv1ProbeID.db (1)
	imcRtools (1)
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	indac.db (13)

	infer (3)
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	iterators (4)
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	ivpack (1)

J

K

L

	labdsv (1)
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	LAPOINTE.db (14)
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	leidenbase (2)
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	lgr (1)
	lhs (2)
	liana (1)

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	LowMACAAnnotation (30)
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	LRBase.Ath.eg.db (2)
	LRBase.Bta.eg.db (2)

	LRBase.Cel.eg.db (2)
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	lumiHumanAll.db (66)
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	lumiMouseAll.db (21)
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	lumiMouseIDMapping (16)
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	lumiMouseV1 (1)
	lumiRatAll.db (12)
	lumiRatIDMapping (14)
	lumiRatV1 (1)
	LymphoSeqDB (35)

M

	m10kcod (1)
	m10kcod.db (12)
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	mm74av2mmensgprobe (1)
	mm74av2mmenst (1)
	mm74av2mmenst7cdf (1)
	mm74av2mmenst7probe (1)
	mm74av2mmenstcdf (1)
	mm74av2mmenstprobe (1)
	mm74av2mmentrezg (1)
	mm74av2mmentrezg7cdf (1)
	mm74av2mmentrezg7probe (1)
	mm74av2mmentrezgcdf (1)
	mm74av2mmentrezgprobe (1)
	mm74av2mmrefseq (1)
	mm74av2mmrefseq7cdf (1)
	mm74av2mmrefseq7probe (1)
	mm74av2mmrefseqcdf (1)
	mm74av2mmrefseqprobe (1)
	mm74av2mmug (1)
	mm74av2mmug7cdf (1)
	mm74av2mmug7probe (1)
	mm74av2mmugcdf (1)
	mm74av2mmugprobe (1)
	mm74av2mmvegae (1)
	mm74av2mmvegaecdf (1)
	mm74av2mmvegaeprobe (1)
	mm74av2mmvegag (1)
	mm74av2mmvegagcdf (1)
	mm74av2mmvegagprobe (1)
	mm74av2mmvegat (1)
	mm74av2mmvegatcdf (1)
	mm74av2mmvegatprobe (1)
	mm74bv2mmense (1)
	mm74bv2mmensecdf (1)
	mm74bv2mmenseprobe (1)
	mm74bv2mmensg (1)
	mm74bv2mmensgcdf (1)
	mm74bv2mmensgprobe (1)
	mm74bv2mmenst (1)
	mm74bv2mmenstcdf (1)
	mm74bv2mmenstprobe (1)
	mm74bv2mmentrezg (1)
	mm74bv2mmentrezgcdf (1)
	mm74bv2mmentrezgprobe (1)
	mm74bv2mmrefseq (1)
	mm74bv2mmrefseqcdf (1)
	mm74bv2mmrefseqprobe (1)
	mm74bv2mmug (1)
	mm74bv2mmugcdf (1)
	mm74bv2mmugprobe (1)
	mm74bv2mmvegae (1)
	mm74bv2mmvegaecdf (1)
	mm74bv2mmvegaeprobe (1)
	mm74bv2mmvegag (1)
	mm74bv2mmvegagcdf (1)
	mm74bv2mmvegagprobe (1)
	mm74bv2mmvegat (1)
	mm74bv2mmvegatcdf (1)
	mm74bv2mmvegatprobe (1)
	mm74cv2mmense (1)
	mm74cv2mmensecdf (1)
	mm74cv2mmenseprobe (1)
	mm74cv2mmensg (1)
	mm74cv2mmensgcdf (1)
	mm74cv2mmensgprobe (1)
	mm74cv2mmenst (1)
	mm74cv2mmenstcdf (1)
	mm74cv2mmenstprobe (1)
	mm74cv2mmentrezg (1)
	mm74cv2mmentrezgcdf (1)
	mm74cv2mmentrezgprobe (1)
	mm74cv2mmrefseq (1)
	mm74cv2mmrefseqcdf (1)
	mm74cv2mmrefseqprobe (1)
	mm74cv2mmug (1)
	mm74cv2mmugcdf (1)
	mm74cv2mmugprobe (1)
	mm74cv2mmvegae (1)
	mm74cv2mmvegaecdf (1)
	mm74cv2mmvegaeprobe (1)
	mm74cv2mmvegag (1)
	mm74cv2mmvegagcdf (1)
	mm74cv2mmvegagprobe (1)
	mm74cv2mmvegat (1)
	mm74cv2mmvegatcdf (1)
	mm74cv2mmvegatprobe (1)
	MmAgilentDesign026655.db (19)
	mmex10stv1mmense (1)
	mmex10stv1mmense7cdf (1)
	mmex10stv1mmense7probe (1)
	mmex10stv1mmensecdf (1)
	mmex10stv1mmenseprobe (1)
	mmex10stv1mmensg (1)
	mmex10stv1mmensg7cdf (1)
	mmex10stv1mmensg7probe (1)
	mmex10stv1mmensgcdf (1)
	mmex10stv1mmensgprobe (1)
	mmex10stv1mmenst (1)
	mmex10stv1mmenst7cdf (1)
	mmex10stv1mmenst7probe (1)
	mmex10stv1mmenstcdf (1)
	mmex10stv1mmenstprobe (1)
	mmex10stv1mmentrezg (1)
	mmex10stv1mmentrezg7cdf (1)
	mmex10stv1mmentrezg7probe (1)
	mmex10stv1mmentrezgcdf (1)
	mmex10stv1mmentrezgprobe (1)
	mmex10stv1mmrefseq (1)
	mmex10stv1mmrefseq7cdf (1)
	mmex10stv1mmrefseq7probe (1)
	mmex10stv1mmrefseqcdf (1)
	mmex10stv1mmrefseqprobe (1)
	mmex10stv1mmug (1)
	mmex10stv1mmug7cdf (1)
	mmex10stv1mmug7probe (1)
	mmex10stv1mmugcdf (1)
	mmex10stv1mmugprobe (1)
	mmrm (1)
	mmuhomology (1)
	MmusculusGenome.mm7 (1)
	mnormt (3)
	MNP (1)
	mockr (0)
	modeldata (2)
	modelenv (1)
	ModelMetrics (1)
	modelr (3)
	modeltools (1)
	moe430a (1)
	moe430a.db (49)
	moe430acdf (18)
	moe430aprobe (20)
	moe430b (1)
	moe430b.db (19)
	moe430bcdf (13)
	moe430bprobe (14)
	moex10stprobeset.db (12)
	moex10sttranscriptcluster.db (18)
	MoExExonProbesetLocation (15)
	MOFA2 (1)
	mogene.1.0.st.v1frmavecs (9)
	mogene10st.db (1)
	mogene10stprobeset.db (18)
	mogene10sttranscriptcluster.db (86)
	mogene10stv1.r3cdf (1)
	mogene10stv1cdf (40)
	mogene10stv1probe (14)
	mogene11stprobeset.db (12)
	mogene11sttranscriptcluster.db (15)
	mogene20stprobeset.db (15)
	mogene20sttranscriptcluster.db (26)
	mogene21stprobeset.db (17)
	mogene21sttranscriptcluster.db (37)
	morpheus (1)
	motifmatchr (1)
	mouse.db0 (16)
	mouse4302 (1)
	mouse4302.db (158)
	mouse4302cdf (103)
	mouse4302frmavecs (19)
	mouse4302probe (18)
	mouse430a2 (1)
	mouse430a2.db (47)
	mouse430a2cdf (23)
	mouse430a2frmavecs (15)
	mouse430a2probe (15)
	mouseCHRLOC (13)
	mouseLLMappings (1)
	mpedbarray (1)
	mpedbarray.db (13)
	mrgda (1)
	mrggsave (0)
	mrgmisc (1)
	mrgsolve (1)
	mrgvalidate (1)
	mrgvalprep (1)
	MsCoreUtils (1)
	MsFeatures (1)
	msigdbr (1)
	msm (1)
	MSnbase (1)
	mstate (1)
	mta10probeset.db (16)
	mta10stprobeset.db (1)
	mta10sttranscriptcluster.db (1)
	mta10transcriptcluster.db (15)
	mu11ksuba (1)
	mu11ksuba.db (15)
	mu11ksubacdf (10)
	mu11ksubaprobe (15)
	mu11ksubb (1)
	mu11ksubb.db (15)
	mu11ksubbcdf (10)
	mu11ksubbprobe (15)
	Mu15v1 (1)
	Mu15v1.db (14)
	mu19ksuba (1)
	mu19ksuba.db (20)
	mu19ksubacdf (13)
	mu19ksubb (1)
	mu19ksubb.db (16)
	mu19ksubbcdf (12)
	mu19ksubc (1)
	mu19ksubc.db (14)
	mu19ksubccdf (15)
	Mu22v3 (1)
	Mu22v3.db (14)
	mu6500subacdf (18)
	mu6500subbcdf (14)
	mu6500subccdf (19)
	mu6500subdcdf (18)
	muhaz (1)
	multcomp (1)
	MultiAssayExperiment (1)
	multidplyr (1)
	multinma (1)
	multtest (1)
	munsell (1)
	Mus.musculus (346)
	muscat (0)
	muscle (1)
	MutationalPatterns (1)
	mutoss (2)
	mvnfast (0)
	mvtnorm (1)
	mwgcod (1)
	mwgcod.db (15)
	mzID (1)
	mzR (1)

N

O

	odbc (1)
	officedown (1)
	officer (3)
	oligo (1)
	oligoClasses (1)
	oligoData (44)
	omyhomology (1)
	onbrand (1)
	OncoBayes2 (1)
	ontologyIndex (4)
	ontoProcData (9)
	openssl (13)
	openxlsx (3)
	operator.tools (1)
	OperonHumanV3 (1)
	OperonHumanV3.db (11)
	optextras (1)
	optimx (1)
	optmatch (1)
	optparse (6)
	ordinal (1)
	org.Ag.eg.db (74)
	org.At.eg.db (1)
	org.At.tair.db (475)
	org.Bt.eg.db (221)
	org.Ce.eg.db (254)
	org.Cf.eg.db (150)
	org.Dm.eg.db (651)
	org.Dr.eg.db (439)
	org.EcK12.eg.db (136)
	org.EcSakai.eg.db (66)
	org.Gg.eg.db (209)
	org.Hs.bf.db (1)
	org.Hs.cross.db (1)
	org.Hs.eg.db (14800)
	org.hs.eg.db (1)
	org.Hs.goa.db (1)
	org.Hs.ipi.db (2)
	org.Hs.pep.db (1)
	org.Hs.ref.db (1)
	org.Hs.sp.db (1)
	org.HsMm.ortholog.db (1)
	org.MeSH.Aca.db (1)
	org.MeSH.Aga.PEST.db (1)
	org.MeSH.Ame.db (1)
	org.MeSH.Aml.db (1)
	org.MeSH.Ana.db (1)
	org.MeSH.Ani.FGSC.db (1)
	org.MeSH.Ath.db (1)
	org.MeSH.Atu.K84.db (1)
	org.MeSH.Bfl.db (1)
	org.MeSH.Bsu.168.db (1)
	org.MeSH.Bsu.Bsn5.db (1)
	org.MeSH.Bsu.RONN1.db (1)
	org.MeSH.Bsu.TUB10.db (1)
	org.MeSH.Bsu.W23.db (1)
	org.MeSH.Bta.db (1)
	org.MeSH.Cal.SC5314.db (1)
	org.MeSH.Cbr.db (1)
	org.MeSH.Cel.db (1)
	org.MeSH.Cfa.db (1)
	org.MeSH.Cin.db (1)
	org.MeSH.Cja.db (1)
	org.MeSH.Cpo.db (1)
	org.MeSH.Cre.db (1)
	org.MeSH.Dan.db (1)
	org.MeSH.Dda.3937.db (1)

	org.MeSH.Ddi.AX4.db (1)
	org.MeSH.Der.db (1)
	org.MeSH.Dgr.db (1)
	org.MeSH.Dme.db (1)
	org.MeSH.Dmo.db (1)
	org.MeSH.Dpe.db (1)
	org.MeSH.Dre.db (1)
	org.MeSH.Dse.db (1)
	org.MeSH.Dsi.db (1)
	org.MeSH.Dvi.db (1)
	org.MeSH.Dya.db (1)
	org.MeSH.Eco.536.db (1)
	org.MeSH.Eco.55989.db (1)
	org.MeSH.Eco.APEC01.db (1)
	org.MeSH.Eco.B.REL606.db (1)
	org.MeSH.Eco.BW2952.db (1)
	org.MeSH.Eco.CFT073.db (1)
	org.MeSH.Eco.E24377A.db (1)
	org.MeSH.Eco.ED1a.db (1)
	org.MeSH.Eco.HS.db (1)
	org.MeSH.Eco.IAI1.db (1)
	org.MeSH.Eco.IAI39.db (1)
	org.MeSH.Eco.K12.DH10B.db (1)
	org.MeSH.Eco.K12.MG1655.db (1)
	org.MeSH.Eco.KO11FL.db (1)
	org.MeSH.Eco.O103.H2.12009.db (1)
	org.MeSH.Eco.O111.H.11128.db (1)
	org.MeSH.Eco.O127.H6.E2348.69.db (1)
	org.MeSH.Eco.O157.H7.EC4115.db (1)
	org.MeSH.Eco.O157.H7.EDL933.db (1)
	org.MeSH.Eco.O157.H7.Sakai.db (1)
	org.MeSH.Eco.O157.H7.TW14359.db (1)
	org.MeSH.Eco.O26.H11.11368.db (1)
	org.MeSH.Eco.O26.H7.CB9615.db (1)
	org.MeSH.Eco.S88.db (1)
	org.MeSH.Eco.SE11.db (1)
	org.MeSH.Eco.SMS35.db (1)
	org.MeSH.Eco.UMN026.db (1)
	org.MeSH.Eco.UTI89.db (1)
	org.MeSH.Eqc.db (1)
	org.MeSH.Gga.db (1)
	org.MeSH.Gma.db (1)
	org.MeSH.Hsa.db (1)
	org.MeSH.Laf.db (1)
	org.MeSH.Lma.db (1)
	org.MeSH.Mdo.db (1)
	org.MeSH.Mes.db (1)
	org.MeSH.Mga.db (1)
	org.MeSH.Miy.db (1)
	org.MeSH.Mml.db (1)
	org.MeSH.Mmu.db (1)
	org.MeSH.Mtr.db (1)
	org.MeSH.Nle.db (1)
	org.MeSH.Oan.db (1)
	org.MeSH.Ocu.db (1)
	org.MeSH.Oni.db (1)
	org.MeSH.Osa.db (1)
	org.MeSH.Pab.db (1)
	org.MeSH.Pae.LESB58.db (1)
	org.MeSH.Pae.PA14.db (1)
	org.MeSH.Pae.PA7.db (1)
	org.MeSH.Pae.PAO1.db (1)
	org.MeSH.Pfa.3D7.db (1)
	org.MeSH.Pto.db (1)
	org.MeSH.Ptr.db (1)
	org.MeSH.Rno.db (1)
	org.MeSH.Sau.COL.db (1)

	org.MeSH.Sau.ED98.db (1)
	org.MeSH.Sau.M013.db (1)
	org.MeSH.Sau.MRSA252.db (1)
	org.MeSH.Sau.MSHR1132.db (1)
	org.MeSH.Sau.MSSA476.db (1)
	org.MeSH.Sau.Mu3.db (1)
	org.MeSH.Sau.Mu50.db (1)
	org.MeSH.Sau.MW2.db (1)
	org.MeSH.Sau.N315.db (1)
	org.MeSH.Sau.Newman.db (1)
	org.MeSH.Sau.RF122.db (1)
	org.MeSH.Sau.USA300FPR3757.db (1)
	org.MeSH.Sau.USA300TCH1516.db (1)
	org.MeSH.Sau.VC40.db (1)
	org.MeSH.Sce.S288c.db (1)
	org.MeSH.Sco.A32.db (1)
	org.MeSH.Sil.db (1)
	org.MeSH.Spo.972h.db (1)
	org.MeSH.Spu.db (1)
	org.MeSH.Ssc.db (1)
	org.MeSH.Syn.db (1)
	org.MeSH.Tbr.9274.db (1)
	org.MeSH.Tgo.ME49.db (1)
	org.MeSH.Tgu.db (1)
	org.MeSH.Vvi.db (1)
	org.MeSH.Xla.db (1)
	org.MeSH.Xtr.db (1)
	org.MeSH.Zma.db (1)
	org.Miy.MeSH.db (0)
	org.Mm.cross.db (1)
	org.Mm.eg.db (5951)
	org.mm.eg.db (1)
	org.Mm.ipi.db (1)
	org.Mm.ref.db (1)
	org.Mm.sp.db (1)
	org.Mmu.eg.db (164)
	org.Mxanthus.db (23)
	org.Pf.plasmo.db (32)
	org.Pt.eg.db (74)
	org.Rn.cross.db (1)
	org.Rn.eg.db (1014)
	org.Rn.ipi.db (1)
	org.Rn.ref.db (1)
	org.Rn.sp.db (1)
	org.Sc.sgd.db (446)
	org.Sco.eg.db (1)
	org.Ss.eg.db (189)
	org.Tgondii.eg.db (1)
	org.Xl.eg.db (84)
	OrganismDbi (1)
	orientlib (1)
	Orthology.eg.db (53)
	osahomology (1)
	osqp (1)
	osriceosrefseq (1)
	osriceosrefseq7cdf (1)
	osriceosrefseq7probe (1)
	osriceosrefseqcdf (1)
	osriceosrefseqprobe (1)
	osriceostigr (1)
	osriceostigr7cdf (1)
	osriceostigr7probe (1)
	osriceostigrcdf (1)
	osriceostigrprobe (1)
	overlapping (1)

P

	p (0)
	packrat (2)
	padr (1)
	paeg1acdf (11)
	paeg1aprobe (14)
	pagedown (1)
	pak (1)
	paletteer (1)
	palmerpenguins (1)
	pamr (1)
	pander (1)
	PANTHER.db (91)
	paradox (1)
	parallel (0)
	parallelly (3)
	parameters (1)
	ParamHelpers (1)
	parsedate (1)
	parsnip (3)
	PartheenMetaData (1)
	PartheenMetaData.db (10)
	partitions (1)
	party (1)
	partykit (1)
	patchwork (3)
	pathview (0)
	paws (1)
	paws.analytics (1)
	paws.application.integration (2)
	paws.common (3)
	paws.compute (2)
	paws.cost.management (1)
	paws.customer.engagement (1)
	paws.database (1)
	paws.developer.tools (1)
	paws.end.user.computing (1)
	paws.machine.learning (1)
	paws.management (1)
	paws.networking (1)
	paws.security.identity (1)
	paws.storage (1)
	pbapply (3)
	PBIR (1)
	pbivnorm (1)
	pbkrest (1)
	pbkrtest (2)
	pbmcapply (1)
	pcaExplorer (1)
	pcaMethods (1)
	pcaPP (2)
	pd.081229.hg18.promoter.medip.hx1 (12)
	pd.2006.07.18.hg18.refseq.promoter (18)
	pd.2006.07.18.mm8.refseq.promoter (11)
	pd.2006.10.31.rn34.refseq.promoter (15)
	pd.ag (16)
	pd.aragene.1.0.st (12)
	pd.aragene.1.1.st (11)
	pd.ath1.121501 (19)
	pd.barley1 (14)
	pd.bovgene.1.0.st (10)
	pd.bovgene.1.1.st (11)
	pd.bovine (16)
	pd.bsubtilis (16)
	pd.cangene.1.0.st (10)
	pd.cangene.1.1.st (12)
	pd.canine (11)
	pd.canine.2 (11)
	pd.celegans (12)
	pd.charm.hg18.example (16)
	pd.chicken (12)
	pd.chigene.1.0.st (15)
	pd.chigene.1.1.st (14)
	pd.chogene.2.0.st (10)
	pd.chogene.2.1.st (14)
	pd.citrus (12)
	pd.clariom.d.human (46)
	pd.clariom.s.human (84)
	pd.clariom.s.human.ht (27)
	pd.clariom.s.mouse (35)
	pd.clariom.s.mouse.ht (16)
	pd.clariom.s.rat (18)
	pd.clariom.s.rat.ht (15)
	pd.cotton (14)
	pd.cyngene.1.0.st (11)
	pd.cyngene.1.1.st (11)
	pd.cyrgene.1.0.st (10)
	pd.cyrgene.1.1.st (11)
	pd.cytogenetics.array (12)
	pd.drogene.1.0.st (10)
	pd.drogene.1.1.st (11)
	pd.drosgenome1 (11)
	pd.drosophila.2 (12)
	pd.e.coli.2 (17)
	pd.ecoli (11)
	pd.ecoli.asv2 (14)
	pd.elegene.1.0.st (11)
	pd.elegene.1.1.st (10)
	pd.equgene.1.0.st (11)
	pd.equgene.1.1.st (10)
	pd.feinberg.hg18.me.hx1 (11)
	pd.feinberg.mm8.me.hx1 (11)
	pd.felgene.1.0.st (10)
	pd.felgene.1.1.st (11)
	pd.fingene.1.0.st (13)
	pd.fingene.1.1.st (14)
	pd.genomewidesnp.5 (26)
	pd.genomewidesnp.6 (38)
	pd.guigene.1.0.st (11)
	pd.guigene.1.1.st (13)
	pd.hc.g110 (15)
	pd.hg.focus (20)
	pd.hg.u133.plus.2 (182)
	pd.hg.u133a (62)
	pd.hg.u133a.2 (38)

	pd.hg.u133a.tag (15)
	pd.hg.u133b (21)
	pd.hg.u219 (30)
	pd.hg.u95a (26)
	pd.hg.u95av2 (39)
	pd.hg.u95b (12)
	pd.hg.u95c (12)
	pd.hg.u95d (11)
	pd.hg.u95e (12)
	pd.hg18.60mer.expr (26)
	pd.ht.hg.u133.plus.pm (27)
	pd.ht.hg.u133a (17)
	pd.ht.mg.430a (14)
	pd.hta.2.0 (75)
	pd.hu6800 (17)
	pd.huex.1.0.st (0)
	pd.huex.1.0.st.v2 (78)
	pd.hugene.1.0.st.v1 (229)
	pd.hugene.1.1.st.v1 (39)
	pd.hugene.2.0.st (85)
	pd.hugene.2.1.st (38)
	pd.maize (15)
	pd.mapping250k.nsp (27)
	pd.mapping250k.sty (27)
	pd.mapping50k.hind240 (22)
	pd.mapping50k.xba240 (36)
	pd.margene.1.0.st (10)
	pd.margene.1.1.st (11)
	pd.medgene.1.0.st (9)
	pd.medgene.1.1.st (10)
	pd.medicago (15)
	pd.mg.u74a (14)
	pd.mg.u74av2 (16)
	pd.mg.u74b (18)
	pd.mg.u74bv2 (19)
	pd.mg.u74c (15)
	pd.mg.u74cv2 (14)
	pd.mirna.1.0 (16)
	pd.mirna.2.0 (13)
	pd.mirna.3.0 (14)
	pd.mirna.3.1 (17)
	pd.mirna.4.0 (24)
	pd.moe430a (17)
	pd.moe430b (14)
	pd.moex.1.0.st (0)
	pd.moex.1.0.st.v1 (19)
	pd.mogene.1.0.st.v1 (145)
	pd.mogene.1.1.st.v1 (14)
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T

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	targetscan.Hs.eg.db (44)
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	TxDb.Athaliana.BioMart.plantmart8 (0)
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	TxDb.Athaliana.BioMart.plantsmart22 (146)
	TxDb.Athaliana.BioMart.plantsmart25 (11)
	TxDb.Athaliana.BioMart.plantsmart28 (50)
	TxDb.Athaliana.BioMart.plantsmart51 (14)
	TxDb.Btaurus.UCSC.bosTau8.refGene (13)
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	TxDb.Celegans.UCSC.ce11.ensGene (86)
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	TxDb.Celegans.UCSC.ce6.ensGene (244)
	TxDb.Cfamiliaris.UCSC.canFam3.refGene (17)

	TxDb.Cfamiliaris.UCSC.canFam4.refGene (9)
	TxDb.Cfamiliaris.UCSC.canFam5.refGene (9)
	TxDb.Dmelanogaster.UCSC.dm3.ensGene (499)
	TxDb.Dmelanogaster.UCSC.dm6.ensGene (114)
	txdb.dmelanogaster.ucsc.dm6.ensgene (0)
	TxDb.Drerio.UCSC.danRer10.refGene (49)
	TxDb.Drerio.UCSC.danRer11.refGene (22)
	TxDb.Ggallus.UCSC.galGal4.refGene (10)
	TxDb.Ggallus.UCSC.galGal5.refGene (26)
	TxDb.Ggallus.UCSC.galGal6.refGene (17)
	TxDb.Hsapiens.BioMart.igis (13)
	TxDb.Hsapiens.UCSC.hg18.knownGene (372)
	TxDb.Hsapiens.UCSC.hg19.knownGene (4150)
	TxDb.Hsapiens.UCSC.hg19.lincRNAsTranscripts (88)
	TxDb.Hsapiens.UCSC.hg38.knownGene (1847)
	TxDb.Hsapiens.UCSC.hg38.refGene (59)
	TxDb.Mmulatta.UCSC.rheMac10.refGene (18)
	TxDb.Mmulatta.UCSC.rheMac3.refGene (9)
	TxDb.Mmulatta.UCSC.rheMac8.refGene (13)
	TxDb.Mmusculus.BioMart.igis (0)
	TxDb.Mmusculus.UCSC.mm10.ensGene (124)
	TxDb.Mmusculus.UCSC.mm10.knownGene (1272)
	TxDb.Mmusculus.UCSC.mm39.knownGene (0)
	TxDb.Mmusculus.UCSC.mm39.refGene (50)
	TxDb.Mmusculus.UCSC.mm9.knownGene (435)
	TxDb.Ptroglodytes.UCSC.panTro4.refGene (11)
	TxDb.Ptroglodytes.UCSC.panTro5.refGene (12)
	TxDb.Ptroglodytes.UCSC.panTro6.refGene (9)
	TxDb.Rnorvegicus.BioMart.igis (11)
	TxDb.Rnorvegicus.UCSC.rn4.ensGene (253)
	TxDb.Rnorvegicus.UCSC.rn5.refGene (57)
	TxDb.Rnorvegicus.UCSC.rn6.ncbiRefSeq (15)
	TxDb.Rnorvegicus.UCSC.rn6.refGene (48)
	TxDb.Rnorvegicus.UCSC.rn7.refGene (15)
	TxDb.Scerevisiae.UCSC.sacCer2.ensGene (1)
	TxDb.Scerevisiae.UCSC.sacCer2.sgdGene (10)
	TxDb.Scerevisiae.UCSC.sacCer3.sgdGene (61)
	TxDb.Sscrofa.UCSC.susScr11.refGene (22)
	TxDb.Sscrofa.UCSC.susScr3.refGene (14)
	tximport (1)
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	tzdb (1)

U

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Z

	zCompositions (2)
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	zebrafish.db (21)

	zebrafish.db0 (10)
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