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tissueTreg

This is the development version of tissueTreg; for the stable release version, see tissueTreg.

TWGBS and RNA-seq data from tissue T regulatory cells from mice


Bioconductor version: Development (3.19)

The package provides ready to use epigenomes (obtained from TWGBS) and transcriptomes (RNA-seq) from various tissues as obtained in the study (Delacher and Imbusch 2017, PMID: 28783152). Regulatory T cells (Treg cells) perform two distinct functions: they maintain self-tolerance, and they support organ homeostasis by differentiating into specialized tissue Treg cells. The underlying dataset characterises the epigenetic and transcriptomic modifications for specialized tissue Treg cells.

Author: Charles Imbusch [aut, cre], Michael Delacher [aut], Markus Feuerer [aut], Benedikt Brors [aut]

Maintainer: Charles Imbusch <c.imbusch at dkfz.de>

Citation (from within R, enter citation("tissueTreg")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("tissueTreg")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("tissueTreg")
tissueTreg HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews ExperimentData, Mus_musculus_Data, RNASeqData, SequencingData, Tissue
Version 1.23.0
License GPL (>= 2)
Depends R (>= 3.5)
Imports
System Requirements
URL https://github.com/cimbusch/tissueTreg
See More
Suggests BiocStyle, knitr, rmarkdown, testthat, ExperimentHub, bsseq, SummarizedExperiment, ggplot2, reshape2
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Depends On Me
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package tissueTreg_1.23.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/tissueTreg
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/tissueTreg
Package Short Url https://bioconductor.org/packages/tissueTreg/
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