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This is the development version of tissueTreg; for the stable release version, see tissueTreg.
Bioconductor version: Development (3.18)
The package provides ready to use epigenomes (obtained from TWGBS) and transcriptomes (RNA-seq) from various tissues as obtained in the study (Delacher and Imbusch 2017, PMID: 28783152). Regulatory T cells (Treg cells) perform two distinct functions: they maintain self-tolerance, and they support organ homeostasis by differentiating into specialized tissue Treg cells. The underlying dataset characterises the epigenetic and transcriptomic modifications for specialized tissue Treg cells.
Author: Charles Imbusch [aut, cre], Michael Delacher [aut], Markus Feuerer [aut], Benedikt Brors [aut]
Maintainer: Charles Imbusch <c.imbusch at dkfz.de>
Citation (from within R,
enter citation("tissueTreg")
):
To install this package, start R (version "4.3") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager") # The following initializes usage of Bioc devel BiocManager::install(version='devel') BiocManager::install("tissueTreg")
For older versions of R, please refer to the appropriate Bioconductor release.
Reference Manual |
biocViews | ExperimentData, Mus_musculus_Data, RNASeqData, SequencingData, Tissue |
Version | 1.21.0 |
License | GPL (>= 2) |
Depends | R (>= 3.5) |
Imports | |
LinkingTo | |
Suggests | BiocStyle, knitr, rmarkdown, testthat, ExperimentHub, bsseq, SummarizedExperiment |
SystemRequirements | |
Enhances | |
URL | https://github.com/cimbusch/tissueTreg |
Depends On Me | |
Imports Me | |
Suggests Me | DMRcate |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | |
Windows Binary | |
macOS Binary (x86_64) | |
macOS Binary (arm64) | |
Source Repository | git clone https://git.bioconductor.org/packages/tissueTreg |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/tissueTreg |
Package Short Url | https://bioconductor.org/packages/tissueTreg/ |
Package Downloads Report | Download Stats |
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