tissueTreg

DOI: 10.18129/B9.bioc.tissueTreg  

This is the development version of tissueTreg; for the stable release version, see tissueTreg.

TWGBS and RNA-seq data from tissue T regulatory cells from mice

Bioconductor version: Development (3.18)

The package provides ready to use epigenomes (obtained from TWGBS) and transcriptomes (RNA-seq) from various tissues as obtained in the study (Delacher and Imbusch 2017, PMID: 28783152). Regulatory T cells (Treg cells) perform two distinct functions: they maintain self-tolerance, and they support organ homeostasis by differentiating into specialized tissue Treg cells. The underlying dataset characterises the epigenetic and transcriptomic modifications for specialized tissue Treg cells.

Author: Charles Imbusch [aut, cre], Michael Delacher [aut], Markus Feuerer [aut], Benedikt Brors [aut]

Maintainer: Charles Imbusch <c.imbusch at dkfz.de>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("tissueTreg")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual

Details

biocViews	ExperimentData, Mus_musculus_Data, RNASeqData, SequencingData, Tissue
Version	1.21.0
License	GPL (>= 2)
Depends	R (>= 3.5)
Imports
LinkingTo
Suggests	BiocStyle, knitr, rmarkdown, testthat, ExperimentHub, bsseq, SummarizedExperiment
SystemRequirements
Enhances
URL	https://github.com/cimbusch/tissueTreg
Depends On Me
Imports Me
Suggests Me	DMRcate
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/tissueTreg
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/tissueTreg
Package Short Url	https://bioconductor.org/packages/tissueTreg/
Package Downloads Report	Download Stats