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spatialDmelxsim

This is the development version of spatialDmelxsim; for the stable release version, see spatialDmelxsim.

Spatial allelic expression counts for fly cross embryo


Bioconductor version: Development (3.19)

Spatial allelic expression counts from Combs & Fraser (2018), compiled into a SummarizedExperiment object. This package contains data of allelic expression counts of spatial slices of a fly embryo, a Drosophila melanogaster x Drosophila simulans cross. See the CITATION file for the data source, and the associated script for how the object was constructed from publicly available data.

Author: Michael Love [aut, cre]

Maintainer: Michael Love <michaelisaiahlove at gmail.com>

Citation (from within R, enter citation("spatialDmelxsim")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("spatialDmelxsim")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("spatialDmelxsim")
spatialDmelxsim HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews Drosophila_melanogaster_Data, ExperimentData, ExperimentHub, ExpressionData, GEO, RNASeqData, SequencingData
Version 1.9.0
License GPL-3
Depends R (>= 4.1), ExperimentHub, SummarizedExperiment
Imports utils
System Requirements
URL https://github.com/mikelove/spatialDmelxsim
Bug Reports https://github.com/mikelove/spatialDmelxsim/issues
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Suggests knitr, rmarkdown, BiocStyle
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package spatialDmelxsim_1.9.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/spatialDmelxsim
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/spatialDmelxsim
Package Short Url https://bioconductor.org/packages/spatialDmelxsim/
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