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scpdata

This is the development version of scpdata; for the stable release version, see scpdata.

Single-Cell Proteomics Data Package


Bioconductor version: Development (3.19)

The package disseminates mass spectrometry (MS)-based single-cell proteomics (SCP) datasets. The data were collected from published work and formatted using the `scp` data structure. The data sets contain quantitative information at spectrum, peptide and/or protein level for single cells or minute sample amounts.

Author: Christophe Vanderaa [aut, cre] , Laurent Gatto [aut]

Maintainer: Christophe Vanderaa <christophe.vanderaa at uclouvain.be>

Citation (from within R, enter citation("scpdata")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("scpdata")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("scpdata")
Data Package for Single Cell Proteomics HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews ExperimentData, ExperimentHub, ExpressionData, MassSpectrometryData, PackageTypeData, Proteome, ReproducibleResearch, SingleCellData
Version 1.11.0
License GPL-2
Depends R (>= 4.2.0), QFeatures, ExperimentHub
Imports utils, AnnotationHub, SingleCellExperiment, S4Vectors
System Requirements
URL
See More
Suggests scp, magrittr, dplyr, knitr, BiocStyle, BiocCheck, rmarkdown, testthat
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me scp
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package scpdata_1.11.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/scpdata
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/scpdata
Package Short Url https://bioconductor.org/packages/scpdata/
Package Downloads Report Download Stats