orthosData

DOI: 10.18129/B9.bioc.orthosData  

This is the development version of orthosData; for the stable release version, see orthosData.

Data for the orthos package

Bioconductor version: Development (3.19)

`orthosData` is the companion ExperimentData package to the `orthos` R package for mechanistic studies using differential gene expression experiments. It provides functions for retrieval from ExperimentHub and local caching of the models and datasets used internally in orthos.

Author: Panagiotis Papasaikas [aut, cre] , Charlotte Soneson [aut] , Michael Stadler [aut] , Friedrich Miescher Institute for Biomedical Research [cph]

Maintainer: Panagiotis Papasaikas <panagiotis.papasaikas at fmi.ch>

Installation

To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("orthosData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("orthosData")

 

HTML	R Script	1. Introduction to orthos
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	ExperimentData, ExperimentHub, RNASeqData
Version	1.1.0
License	MIT + file LICENSE
Depends
Imports	AnnotationHub, BiocFileCache, ExperimentHub, HDF5Array, stringr, SummarizedExperiment
LinkingTo
Suggests	BiocStyle, ggplot2, knitr, rmarkdown, testthat
SystemRequirements
Enhances
URL	https://github.com/fmicompbio/orthosData
BugReports	https://github.com/fmicompbio/orthosData/issues
Depends On Me
Imports Me	orthos
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	orthosData_1.1.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/orthosData
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/orthosData
Package Short Url	https://bioconductor.org/packages/orthosData/
Package Downloads Report	Download Stats