orthosData
This is the released version of orthosData; for the devel version, see orthosData.
Data for the orthos package
Bioconductor version: Release (3.21)
`orthosData` is the companion ExperimentData package to the `orthos` R package for mechanistic studies using differential gene expression experiments. It provides functions for retrieval from ExperimentHub and local caching of the models and datasets used internally in orthos.
Author: Panagiotis Papasaikas [aut, cre]
, Charlotte Soneson [aut]
, Michael Stadler [aut]
, Friedrich Miescher Institute for Biomedical Research [cph]
Maintainer: Panagiotis Papasaikas <panagiotis.papasaikas at fmi.ch>
citation("orthosData")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("orthosData")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("orthosData")| 1. Introduction to orthos | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | ExperimentData, ExperimentHub, RNASeqData |
| Version | 1.6.0 |
| License | MIT + file LICENSE |
| Depends | |
| Imports | AnnotationHub, BiocFileCache, ExperimentHub, HDF5Array, stringr, SummarizedExperiment |
| System Requirements | |
| URL | https://github.com/fmicompbio/orthosData |
| Bug Reports | https://github.com/fmicompbio/orthosData/issues |
See More
| Suggests | BiocStyle, ggplot2, knitr, rmarkdown, testthat |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | orthos |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | orthosData_1.6.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/orthosData |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/orthosData |
| Package Short Url | https://bioconductor.org/packages/orthosData/ |
| Package Downloads Report | Download Stats |