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octad.db

This is the development version of octad.db; for the stable release version, see octad.db.

Open Cancer TherApeutic Discovery (OCTAD) database


Bioconductor version: Development (3.19)

Open Cancer TherApeutic Discovery (OCTAD) package implies sRGES approach for the drug discovery. The essential idea is to identify drugs that reverse the gene expression signature of a disease by tamping down over-expressed genes and stimulating weakly expressed ones. The following package contains all required precomputed data for whole OCTAD pipeline computation.

Author: E. Chekalin [aut, cre], S. Paithankar [aut], B. Zeng [aut], B. Glicksberg [ctb], P. Newbury [ctb], J. Xing [ctb], K. Liu [ctb], A. Wen [ctb], D. Joseph [ctb], B. Chen [aut]

Maintainer: E. Chekalin <eygen.chekalin at gmail.com>

Citation (from within R, enter citation("octad.db")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("octad.db")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("octad.db")
octad.db HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews CancerData, ExperimentData, ExperimentHub, ExpressionData, SequencingData
Version 1.5.0
License Artistic-2.0
Depends R (>= 4.2.0), ExperimentHub
Imports
System Requirements
URL
See More
Suggests knitr, rmarkdown
Linking To
Enhances
Depends On Me octad
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package octad.db_1.5.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/octad.db
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/octad.db
Package Short Url https://bioconductor.org/packages/octad.db/
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