muscData
This is the development version of muscData; for the stable release version, see muscData.
Multi-sample multi-group scRNA-seq data
Bioconductor version: Development (3.21)
Data package containing a collection of multi-sample multi-group scRNA-seq datasets in SingleCellExperiment Bioconductor object format.
Author: Helena L. Crowell [aut, cre]
Maintainer: Helena L. Crowell <helena.crowell at uzh.ch>
Citation (from within R, enter
citation("muscData")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("muscData")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("muscData")| Multi-sample multi-group scRNA-seq data | HTML | R Script |
| Reference Manual | ||
| LICENSE | Text |
Details
| biocViews | ExperimentData, ExperimentHub, ExpressionData, GEO, Homo_sapiens_Data, ImmunoOncologyData, SingleCellData |
| Version | 1.21.0 |
| License | MIT + file LICENSE |
| Depends | R (>= 3.6), ExperimentHub, SingleCellExperiment |
| Imports | utils |
| System Requirements | |
| URL | https://github.com/HelenaLC/muscData |
| Bug Reports | https://github.com/HelenaLC/muscData/issues |
See More
| Suggests | BiocStyle, dplyr, DropletUtils, knitr, GEOquery, Matrix, matrixStats, methods, muscat, rmarkdown, R.utils, readxl, scater, scds, Seurat |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | glmGamPoi |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | muscData_1.21.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/muscData |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/muscData |
| Package Short Url | https://bioconductor.org/packages/muscData/ |
| Package Downloads Report | Download Stats |