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This is the development version of muscData; for the stable release version, see muscData.

Multi-sample multi-group scRNA-seq data

Bioconductor version: Development (3.19)

Data package containing a collection of multi-sample multi-group scRNA-seq datasets in SingleCellExperiment Bioconductor object format.

Author: Helena L. Crowell [aut, cre]

Maintainer: Helena L. Crowell <helena.crowell at uzh.ch>

Citation (from within R, enter citation("muscData")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))

# The following initializes usage of Bioc devel


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

Multi-sample multi-group scRNA-seq data HTML R Script
Reference Manual PDF


biocViews ExperimentData, ExperimentHub, ExpressionData, GEO, Homo_sapiens_Data, ImmunoOncologyData, SingleCellData
Version 1.17.0
License MIT + file LICENSE
Depends R (>= 3.6), ExperimentHub, SingleCellExperiment
Imports utils
System Requirements
URL https://github.com/HelenaLC/muscData
Bug Reports https://github.com/HelenaLC/muscData/issues
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Suggests BiocStyle, dplyr, DropletUtils, knitr, GEOquery, Matrix, matrixStats, methods, muscat, rmarkdown, R.utils, readxl, scater, scds, Seurat
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Follow Installation instructions to use this package in your R session.

Source Package muscData_1.17.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/muscData
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/muscData
Package Short Url https://bioconductor.org/packages/muscData/
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