Registration and Call for Abstracts Open for Bioc2024

furrowSeg

This is the development version of furrowSeg; for the stable release version, see furrowSeg.

Furrow Segmentation


Bioconductor version: Development (3.19)

Image feature data and analysis codes for the Guglielmi, Barry et al. paper describing the application of an optogenetics tools to disrupt Drosophila embryo furrowing.

Author: Joseph Barry

Maintainer: Joseph Barry <joseph.barry at embl.de>

Citation (from within R, enter citation("furrowSeg")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("furrowSeg")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("furrowSeg")
Supplementary Methods - Automatic generation of paper figures PDF R Script
Supplementary Methods - Example furrow segmentation PDF R Script
Reference Manual PDF

Details

biocViews Drosophila_melanogaster_Data, ExperimentData, ReproducibleResearch, Tissue
Version 1.31.0
License Artistic-2.0
Depends R (>= 3.3), EBImage
Imports abind, dplyr, locfit, tiff
System Requirements
URL
See More
Suggests BiocStyle, ggplot2, knitr
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package furrowSeg_1.31.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/furrowSeg
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/furrowSeg
Package Short Url https://bioconductor.org/packages/furrowSeg/
Package Downloads Report Download Stats