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This is the development version of bodymapRat; for the stable release version, see bodymapRat.

Experimental dataset from the rat BodyMap project

Bioconductor version: Development (3.19)

This package contains a SummarizedExperiment from the Yu et al. (2013) paper that performed the rat BodyMap across 11 organs and 4 developmental stages. Raw FASTQ files were downloaded and mapped using STAR. Data is available on ExperimentHub as a data package.

Author: Stephanie Hicks [aut, cre] , Kwame Okrah [aut]

Maintainer: Stephanie Hicks <shicks19 at jhu.edu>

Citation (from within R, enter citation("bodymapRat")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))

# The following initializes usage of Bioc devel


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

The bodymapRat data user's guide HTML R Script
Reference Manual PDF


biocViews ExperimentData, ExperimentHub, ExpressionData, RNASeqData, SequencingData
Version 1.19.0
License CC BY 4.0
Depends R (>= 3.6.0), SummarizedExperiment, ExperimentHub
Imports utils
System Requirements
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Suggests rmarkdown, knitr, BiocStyle, testthat
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Depends On Me
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Suggests Me qsmooth
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Follow Installation instructions to use this package in your R session.

Source Package bodymapRat_1.19.0.tar.gz
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Source Repository git clone https://git.bioconductor.org/packages/bodymapRat
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/bodymapRat
Package Short Url https://bioconductor.org/packages/bodymapRat/
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