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This is the development version of SFEData; for the stable release version, see SFEData.

Example SpatialFeatureExperiment datasets

Bioconductor version: Development (3.19)

Example spatial transcriptomics datasets with Simple Feature annotations as SpatialFeatureExperiment objects. Technologies include Visium, slide-seq, Nanostring CoxMX, Vizgen MERFISH, and 10X Xenium. Tissues include mouse skeletal muscle, human melanoma metastasis, human lung, breast cancer, and mouse liver.

Author: Lambda Moses [aut, cre] , Kayla Jackson [aut] , Lior Pachter [aut, ths]

Maintainer: Lambda Moses <dlu2 at caltech.edu>

Citation (from within R, enter citation("SFEData")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))

# The following initializes usage of Bioc devel


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

Example SpatialFeatureExperiment datasets HTML R Script
Reference Manual PDF


biocViews ExperimentData, ExperimentHub, ExpressionData, Homo_sapiens_Data, Mus_musculus_Data, SingleCellData, SpatialData, Tissue
Version 1.5.0
License Artistic-2.0
Imports BiocFileCache, AnnotationHub, ExperimentHub
System Requirements
URL https://github.com/pachterlab/SFEData
Bug Reports https://github.com/pachterlab/SFEData/issues
See More
Suggests BiocStyle, knitr, rmarkdown, SpatialFeatureExperiment, testthat (>= 3.0.0)
Linking To
Depends On Me
Imports Me
Suggests Me SpatialFeatureExperiment, Voyager
Links To Me
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Follow Installation instructions to use this package in your R session.

Source Package SFEData_1.5.0.tar.gz
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Package Short Url https://bioconductor.org/packages/SFEData/
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