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RTCGA.rnaseq

This is the development version of RTCGA.rnaseq; for the stable release version, see RTCGA.rnaseq.

Rna-seq datasets from The Cancer Genome Atlas Project


Bioconductor version: Development (3.20)

Package provides rna-seq datasets from The Cancer Genome Atlas Project for all cohorts types from http://gdac.broadinstitute.org/. Rna-seq data format is explained here https://wiki.nci.nih.gov/display/TCGA/RNASeq+Version+2. Data source is illumina hiseq Level 3 RSEM normalized expression data. Data from 2015-11-01 snapshot.

Author: Marcin Kosinski <m.p.kosinski at gmail.com>

Maintainer: Marcin Kosinski <m.p.kosinski at gmail.com>

Citation (from within R, enter citation("RTCGA.rnaseq")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("RTCGA.rnaseq")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RTCGA.rnaseq")
Using RTCGA to download RNAseq data as included in RTCGA.rnaseq HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews Annotation Data, ExperimentData
Version 20151101.35.0
License GPL-2
Depends R (>= 3.2.0), RTCGA
Imports
System Requirements
URL
Bug Reports https://github.com/RTCGA/RTCGA/issues
See More
Suggests knitr, rmarkdown
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me RTCGA, TDbasedUFEadv, FSelectorRcpp
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package RTCGA.rnaseq_20151101.35.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/RTCGA.rnaseq
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/RTCGA.rnaseq
Package Short Url https://bioconductor.org/packages/RTCGA.rnaseq/
Package Downloads Report Download Stats