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PasillaTranscriptExpr

This is the development version of PasillaTranscriptExpr; for the stable release version, see PasillaTranscriptExpr.

Data package with transcript expression obtained with kallisto from pasilla knock-down RNA-Seq data from Brooks et al.


Bioconductor version: Development (3.19)

Provides kallisto workflow and transcript expression of RNA-Seq data from Brooks et al.

Author: Malgorzata Nowicka [aut, cre]

Maintainer: Malgorzata Nowicka <gosia.nowicka at uzh.ch>

Citation (from within R, enter citation("PasillaTranscriptExpr")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("PasillaTranscriptExpr")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("PasillaTranscriptExpr")
Generation of transcript counts from pasilla dataset with kallisto PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews Drosophila_melanogaster_Data, ExperimentData, ExpressionData, GEO, Genome, RNASeqData, SequencingData
Version 1.31.0
License GPL (>= 3)
Depends R (>= 3.3.0)
Imports
System Requirements
URL
See More
Suggests rtracklayer, BiocStyle, knitr, testthat
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me DRIMSeq
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package PasillaTranscriptExpr_1.31.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/PasillaTranscriptExpr
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/PasillaTranscriptExpr
Package Short Url https://bioconductor.org/packages/PasillaTranscriptExpr/
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