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This is the development version of NxtIRFdata; for the stable release version, see NxtIRFdata.

Data for NxtIRF

Bioconductor version: Development (3.19)

NxtIRFdata is a companion package for SpliceWiz, an interactive analysis and visualization tool for alternative splicing quantitation (including intron retention) for RNA-seq BAM files. NxtIRFdata contains Mappability files required for the generation of human and mouse references. NxtIRFdata also contains a synthetic genome reference and example BAM files used to demonstrate SpliceWiz's functionality. BAM files are based on 6 samples from the Leucegene dataset provided by NCBI Gene Expression Omnibus under accession number GSE67039.

Author: Alex Chit Hei Wong [aut, cre, cph], Ulf Schmitz [ctb]

Maintainer: Alex Chit Hei Wong <a.wong at centenary.org.au>

Citation (from within R, enter citation("NxtIRFdata")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))

# The following initializes usage of Bioc devel


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

NxtIRFdata: a data package for NxtIRF HTML R Script
Reference Manual PDF


biocViews ExperimentData, ExperimentHub, ExpressionData, Genome, PackageTypeData, RNASeqData
Version 1.9.0
License MIT + file LICENSE
Imports ExperimentHub, BiocFileCache, rtracklayer, R.utils
System Requirements
URL https://github.com/alexchwong/NxtIRFdata
Bug Reports https://support.bioconductor.org/
See More
Suggests testthat (>= 3.0.0), knitr, rmarkdown
Linking To
Depends On Me SpliceWiz
Imports Me
Suggests Me
Links To Me
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package NxtIRFdata_1.9.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/NxtIRFdata
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/NxtIRFdata
Package Short Url https://bioconductor.org/packages/NxtIRFdata/
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