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HiContactsData

This is the development version of HiContactsData; for the stable release version, see HiContactsData.

HiContacts companion data package


Bioconductor version: Development (3.19)

Provides a collection of Hi-C files (pairs, (m)cool and fastq). These datasets can be read into R and further investigated and visualized with the HiContacts package. Data includes yeast Hi-C data generated by the Koszul lab from the Pasteur Institute.

Author: Jacques Serizay [aut, cre]

Maintainer: Jacques Serizay <jacquesserizay at gmail.com>

Citation (from within R, enter citation("HiContactsData")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("HiContactsData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("HiContactsData")
HiContactsData HTML R Script
Reference Manual PDF
LICENSE Text

Details

biocViews ExperimentData, ExperimentHub, SequencingData
Version 1.5.3
License MIT + file LICENSE
Depends ExperimentHub
Imports BiocFileCache, AnnotationHub
System Requirements
URL https://github.com/js2264/HiContactsData
Bug Reports https://github.com/js2264/HiContactsData/issues
See More
Suggests testthat, methods, BiocStyle, knitr, rmarkdown
Linking To
Enhances
Depends On Me
Imports Me OHCA
Suggests Me HiCExperiment, HiContacts, HiCool, plyinteractions
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package HiContactsData_1.5.3.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/HiContactsData
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/HiContactsData
Package Short Url https://bioconductor.org/packages/HiContactsData/
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