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HarmonizedTCGAData

This is the development version of HarmonizedTCGAData; for the stable release version, see HarmonizedTCGAData.

Processed Harmonized TCGA Data of Five Selected Cancer Types


Bioconductor version: Development (3.19)

This package contains the processed harmonized TCGA data of five cancer types used in "Tianle Ma and Aidong Zhang, Integrate Multi-omic Data Using Affinity Network Fusion (ANF) for Cancer Patient Clustering".

Author: Tianle Ma

Maintainer: Tianle Ma <tianlema at buffalo.edu>

Citation (from within R, enter citation("HarmonizedTCGAData")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("HarmonizedTCGAData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("HarmonizedTCGAData")
Patient Affinity Matrices Derived from Harmonized TCGA Dataset HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews CancerData, ExperimentData, ReproducibleResearch
Version 1.25.0
License GPL-3
Depends R (>= 3.4.0)
Imports ExperimentHub
System Requirements
URL
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Suggests AnnotationHub, knitr, rmarkdown, igraph, survival, ANF, stats, testthat
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package HarmonizedTCGAData_1.25.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/HarmonizedTCGAData
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/HarmonizedTCGAData
Package Short Url https://bioconductor.org/packages/HarmonizedTCGAData/
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