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This is the development version of FieldEffectCrc; for the stable release version, see FieldEffectCrc.

Tumor, tumor-adjacent normal, and healthy colorectal transcriptomes as SummarizedExperiment objects

Bioconductor version: Development (3.19)

Processed RNA-seq data for 1,139 human primary colorectal tissue samples across three phenotypes, including tumor, normal adjacent-to-tumor, and healthy, available as Synapse ID syn22237139 on synapse.org. Data have been parsed into SummarizedExperiment objects available via ExperimentHub to facilitate reproducibility and extension of results from Dampier et al. (PMCID: PMC7386360, PMID: 32764205).

Author: Christopher Dampier [aut, cre] , Bioconductor Package Maintainer [ctb]

Maintainer: Christopher Dampier <chd5n at virginia.edu>

Citation (from within R, enter citation("FieldEffectCrc")):


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SummarizedExperiments of colorectal transcriptomes HTML R Script
Reference Manual PDF


biocViews ColonCancerData, ExperimentData, ExperimentHub, ExpressionData, Homo_sapiens_Data, RNASeqData, ReproducibleResearch, SequencingData, Tissue
Version 1.13.0
License Artistic-2.0
Depends utils
Imports BiocStyle, RUnit, SummarizedExperiment, ExperimentHub(>= 0.99.6), AnnotationHub, DESeq2
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URL http://bioconductor.org/packages/release/bioc/html/FieldEffectCrc.html
Bug Reports https://github.com/Bioconductor/FieldEffectCrc/
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Suggests knitr, rmarkdown, BiocGenerics, sva, BiocManager
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Source Package FieldEffectCrc_1.13.0.tar.gz
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Package Short Url https://bioconductor.org/packages/FieldEffectCrc/
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