DeSousa2013

DOI: 10.18129/B9.bioc.DeSousa2013  

This is the development version of DeSousa2013; for the stable release version, see DeSousa2013.

Poor prognosis colon cancer is defined by a molecularly distinct subtype and precursor lesion

Bioconductor version: Development (3.18)

This package reproduces the main pipeline to analyze the AMC-AJCCII-90 microarray data set in De Sousa et al. accepted by Nature Medicine in 2013.

Author: Xin Wang <Xin.Wang at cruk.cam.ac.uk>

Maintainer: Xin Wang <Xin.Wang at cruk.cam.ac.uk>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("DeSousa2013")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual

Details

biocViews	CancerData, ColonCancerData, ExperimentData, MicroarrayData
Version	1.37.0
License	Artistic-2.0
Depends	R (>= 2.15)
Imports	affy, frma, frmaTools, hgu133plus2.db, hgu133plus2frmavecs, sva, rgl, ConsensusClusterPlus, cluster, siggenes, ROCR, pamr, survival, gplots, AnnotationDbi, Biobase
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/DeSousa2013
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/DeSousa2013
Package Short Url	https://bioconductor.org/packages/DeSousa2013/
Package Downloads Report	Download Stats