tidySingleCellExperiment

DOI: 10.18129/B9.bioc.tidySingleCellExperiment    

This is the development version of tidySingleCellExperiment; for the stable release version, see tidySingleCellExperiment.

Brings SingleCellExperiment to the Tidyverse

Bioconductor version: Development (3.17)

tidySingleCellExperiment is an adapter that abstracts the 'SingleCellExperiment' container in the form of tibble and allows the data manipulation, plotting and nesting using 'tidyverse'

Author: Stefano Mangiola [aut, cre]

Maintainer: Stefano Mangiola <mangiolastefano at gmail.com>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("tidySingleCellExperiment")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual

Details

biocViews	AssayDomain, Clustering, DifferentialExpression, GeneExpression, Infrastructure, Normalization, QualityControl, RNASeq, Sequencing, Software
Version	1.9.0
In Bioconductor since	BioC 3.12 (R-4.0) (2 years)
License	GPL-3
Depends	R (>= 4.0.0), ttservice, SingleCellExperiment
Imports	SummarizedExperiment, dplyr, tibble, tidyr, ggplot2, plotly, magrittr, rlang, purrr, lifecycle, methods, utils, S4Vectors, tidyselect, ellipsis, pillar, stringr, cli, fansi
LinkingTo
Suggests	BiocStyle, testthat, knitr, markdown, SingleCellSignalR, SingleR, scater, scran, tidyHeatmap, igraph, GGally, Matrix, uwot, celldex, dittoSeq, EnsDb.Hsapiens.v86
SystemRequirements
Enhances
URL	https://github.com/stemangiola/tidySingleCellExperiment
BugReports	https://github.com/stemangiola/tidySingleCellExperiment/issues
Depends On Me
Imports Me
Suggests Me	sccomp
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/tidySingleCellExperiment
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/tidySingleCellExperiment
Package Short Url	https://bioconductor.org/packages/tidySingleCellExperiment/
Package Downloads Report	Download Stats