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shiny.gosling

This is the development version of shiny.gosling; to use it, please install the devel version of Bioconductor.

A Grammar-based Toolkit for Scalable and Interactive Genomics Data Visualization for R and Shiny


Bioconductor version: Development (3.19)

A Grammar-based Toolkit for Scalable and Interactive Genomics Data Visualization. http://gosling-lang.org/. This R package is based on gosling.js. It uses R functions to create gosling plots that could be embedded onto R Shiny apps.

Author: Appsilon [aut, cre], Anirban Shaw [aut] , Federico Rivadeneira [aut]

Maintainer: Appsilon <opensource at appsilon.com>

Citation (from within R, enter citation("shiny.gosling")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("shiny.gosling")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("shiny.gosling")
1. Introduction to shiny.gosling HTML R Script
2. Using a GRanges object in shiny.gosling HTML R Script
3. Creating a Circos Plot with VCF Data HTML R Script
4. Creating an Interactive Line Chart with shiny.gosling HTML R Script
5. Creating a Multi-Scale Sequence Track HTML R Script
Reference Manual PDF

Details

biocViews Genetics, ShinyApps, Software, Visualization
Version 0.99.5
In Bioconductor since BioC 3.19 (R-4.4)
License LGPL-3
Depends
Imports htmltools, jsonlite, rlang, shiny, shiny.react, fs, digest, rjson
System Requirements
URL
See More
Suggests config, covr, knitr, lintr, mockery (>= 0.4.3), rcmdcheck, rmarkdown, sessioninfo, spelling, testthat (>= 3.0.0), GenomicRanges, VariantAnnotation, StructuralVariantAnnotation, biovizBase, ggbio
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package shiny.gosling_0.99.5.tar.gz
Windows Binary
macOS Binary (x86_64) shiny.gosling_0.99.5.tgz
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/shiny.gosling
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/shiny.gosling
Bioc Package Browser https://code.bioconductor.org/browse/shiny.gosling/
Package Short Url https://bioconductor.org/packages/shiny.gosling/
Package Downloads Report Download Stats