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scTGIF

This is the development version of scTGIF; for the stable release version, see scTGIF.

Cell type annotation for unannotated single-cell RNA-Seq data


Bioconductor version: Development (3.19)

scTGIF connects the cells and the related gene functions without cell type label.

Author: Koki Tsuyuzaki [aut, cre]

Maintainer: Koki Tsuyuzaki <k.t.the-answer at hotmail.co.jp>

Citation (from within R, enter citation("scTGIF")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("scTGIF")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Details

biocViews DimensionReduction, GeneExpression, QualityControl, SingleCell, Software
Version 1.17.0
In Bioconductor since BioC 3.10 (R-3.6) (4.5 years)
License Artistic-2.0
Depends R (>= 3.6.0)
Imports GSEABase, Biobase, SingleCellExperiment, BiocStyle, plotly, tagcloud, rmarkdown, Rcpp, grDevices, graphics, utils, knitr, S4Vectors, SummarizedExperiment, RColorBrewer, nnTensor, methods, scales, msigdbr, schex, tibble, ggplot2, igraph
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS Binary (x86_64) scTGIF_1.17.0.tgz
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/scTGIF
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/scTGIF
Bioc Package Browser https://code.bioconductor.org/browse/scTGIF/
Package Short Url https://bioconductor.org/packages/scTGIF/
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