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This is the development version of scTGIF; for the stable release version, see scTGIF.

Cell type annotation for unannotated single-cell RNA-Seq data

Bioconductor version: Development (3.19)

scTGIF connects the cells and the related gene functions without cell type label.

Author: Koki Tsuyuzaki [aut, cre]

Maintainer: Koki Tsuyuzaki <k.t.the-answer at>

Citation (from within R, enter citation("scTGIF")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))

# The following initializes usage of Bioc devel


For older versions of R, please refer to the appropriate Bioconductor release.


Reference Manual PDF


biocViews DimensionReduction, GeneExpression, QualityControl, SingleCell, Software
Version 1.17.0
In Bioconductor since BioC 3.10 (R-3.6) (4.5 years)
License Artistic-2.0
Depends R (>= 3.6.0)
Imports GSEABase, Biobase, SingleCellExperiment, BiocStyle, plotly, tagcloud, rmarkdown, Rcpp, grDevices, graphics, utils, knitr, S4Vectors, SummarizedExperiment, RColorBrewer, nnTensor, methods, scales, msigdbr, schex, tibble, ggplot2, igraph
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