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rqubic

This is the development version of rqubic; for the stable release version, see rqubic.

Qualitative biclustering algorithm for expression data analysis in R


Bioconductor version: Development (3.19)

This package implements the QUBIC algorithm introduced by Li et al. for the qualitative biclustering with gene expression data.

Author: Jitao David Zhang [aut, cre, ctb]

Maintainer: Jitao David Zhang <jitao_david.zhang at roche.com>

Citation (from within R, enter citation("rqubic")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("rqubic")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("rqubic")
Qualitative Biclustering with Bioconductor Package rqubic PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews Clustering, Software
Version 1.49.0
In Bioconductor since BioC 2.9 (R-2.14) (12.5 years)
License GPL-2
Depends
Imports methods, Biobase, BiocGenerics, biclust
System Requirements
URL
See More
Suggests RColorBrewer
Linking To
Enhances
Depends On Me
Imports Me miRSM
Suggests Me RcmdrPlugin.BiclustGUI
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package rqubic_1.49.0.tar.gz
Windows Binary rqubic_1.49.0.zip
macOS Binary (x86_64) rqubic_1.49.0.tgz
macOS Binary (arm64) rqubic_1.49.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/rqubic
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/rqubic
Bioc Package Browser https://code.bioconductor.org/browse/rqubic/
Package Short Url https://bioconductor.org/packages/rqubic/
Package Downloads Report Download Stats