rTRM
This is the development version of rTRM; for the stable release version, see rTRM.
Identification of Transcriptional Regulatory Modules from Protein-Protein Interaction Networks
Bioconductor version: Development (3.21)
rTRM identifies transcriptional regulatory modules (TRMs) from protein-protein interaction networks.
Author: Diego Diez
Maintainer: Diego Diez <diego10ruiz at gmail.com>
Citation (from within R, enter
citation("rTRM")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("rTRM")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("rTRM")| Introduction to rTRM | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | GeneRegulation, GraphAndNetwork, Network, Software, Transcription |
| Version | 1.45.0 |
| In Bioconductor since | BioC 2.13 (R-3.0) (11 years) |
| License | GPL-3 |
| Depends | R (>= 2.10), igraph (>= 1.0) |
| Imports | methods, AnnotationDbi, DBI, RSQLite |
| System Requirements | |
| URL | https://github.com/ddiez/rTRM |
| Bug Reports | https://github.com/ddiez/rTRM/issues |
See More
| Suggests | RUnit, BiocGenerics, MotifDb, graph, PWMEnrich, biomaRt, Biostrings, BSgenome.Mmusculus.UCSC.mm8.masked, org.Hs.eg.db, org.Mm.eg.db, ggplot2, BiocStyle, knitr, rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | rTRMui |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | rTRM_1.45.0.tar.gz |
| Windows Binary (x86_64) | rTRM_1.45.0.zip |
| macOS Binary (x86_64) | rTRM_1.45.0.tgz |
| macOS Binary (arm64) | rTRM_1.45.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/rTRM |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/rTRM |
| Bioc Package Browser | https://code.bioconductor.org/browse/rTRM/ |
| Package Short Url | https://bioconductor.org/packages/rTRM/ |
| Package Downloads Report | Download Stats |