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This is the development version of pageRank; for the stable release version, see pageRank.

Temporal and Multiplex PageRank for Gene Regulatory Network Analysis

Bioconductor version: Development (3.20)

Implemented temporal PageRank analysis as defined by Rozenshtein and Gionis. Implemented multiplex PageRank as defined by Halu et al. Applied temporal and multiplex PageRank in gene regulatory network analysis.

Author: Hongxu Ding [aut, cre, ctb, cph]

Maintainer: Hongxu Ding <hd2326 at>

Citation (from within R, enter citation("pageRank")):


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if (!require("BiocManager", quietly = TRUE))

# The following initializes usage of Bioc devel


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

introduction.pdf PDF R Script
Reference Manual PDF


biocViews GeneTarget, Network, Software, StatisticalMethod
Version 1.15.0
In Bioconductor since BioC 3.12 (R-4.0) (3.5 years)
License GPL-2
Depends R (>= 4.0)
Imports GenomicRanges, igraph, motifmatchr, stats, utils, grDevices, graphics
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Suggests bcellViper, BSgenome.Hsapiens.UCSC.hg19, JASPAR2018, TxDb.Hsapiens.UCSC.hg19.knownGene,, TFBSTools, GenomicFeatures, annotate
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Source Package pageRank_1.15.0.tar.gz
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