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nondetects

This is the development version of nondetects; for the stable release version, see nondetects.

Non-detects in qPCR data


Bioconductor version: Development (3.19)

Methods to model and impute non-detects in the results of qPCR experiments.

Author: Matthew N. McCall <mccallm at gmail.com>, Valeriia Sherina <valery.sherina at gmail.com>

Maintainer: Valeriia Sherina <valery.sherina at gmail.com>

Citation (from within R, enter citation("nondetects")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("nondetects")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("nondetects")
Title of your vignette HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews AssayDomain, GeneExpression, Preprocessing, Software, Technology, WorkflowStep, qPCR
Version 2.33.0
In Bioconductor since BioC 2.14 (R-3.1) (10 years)
License GPL-3
Depends R (>= 3.2), Biobase(>= 2.22.0)
Imports limma, mvtnorm, utils, methods, arm, HTqPCR(>= 1.16.0)
System Requirements
URL
See More
Suggests knitr, rmarkdown, BiocStyle(>= 1.0.0), RUnit, BiocGenerics(>= 0.8.0)
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package nondetects_2.33.0.tar.gz
Windows Binary nondetects_2.33.0.zip
macOS Binary (x86_64) nondetects_2.33.0.tgz
macOS Binary (arm64) nondetects_2.33.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/nondetects
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/nondetects
Bioc Package Browser https://code.bioconductor.org/browse/nondetects/
Package Short Url https://bioconductor.org/packages/nondetects/
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