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This is the development version of multiGSEA; for the stable release version, see multiGSEA.

Combining GSEA-based pathway enrichment with multi omics data integration

Bioconductor version: Development (3.20)

Extracted features from pathways derived from 8 different databases (KEGG, Reactome, Biocarta, etc.) can be used on transcriptomic, proteomic, and/or metabolomic level to calculate a combined GSEA-based enrichment score.

Author: Sebastian Canzler [aut, cre] , Jörg Hackermüller [aut]

Maintainer: Sebastian Canzler <sebastian.canzler at>

Citation (from within R, enter citation("multiGSEA")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))

# The following initializes usage of Bioc devel


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

multiGSEA.html HTML R Script
Reference Manual PDF


biocViews BioCarta, GeneSetEnrichment, Pathways, Reactome, Software
Version 1.15.0
In Bioconductor since BioC 3.12 (R-4.0) (3.5 years)
License GPL-3
Depends R (>= 4.0.0)
Imports magrittr, graphite, AnnotationDbi, metaboliteIDmapping, dplyr, fgsea, metap, rappdirs, rlang, methods
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Source Package multiGSEA_1.15.0.tar.gz
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