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immunoClust

This is the development version of immunoClust; for the stable release version, see immunoClust.

immunoClust - Automated Pipeline for Population Detection in Flow Cytometry


Bioconductor version: Development (3.19)

immunoClust is a model based clustering approach for Flow Cytometry samples. The cell-events of single Flow Cytometry samples are modelled by a mixture of multinominal normal- or t-distributions. The cell-event clusters of several samples are modelled by a mixture of multinominal normal-distributions aiming stable co-clusters across these samples.

Author: Till Soerensen [aut, cre]

Maintainer: Till Soerensen <till.soerensen at bioretis.com>

Citation (from within R, enter citation("immunoClust")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("immunoClust")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("immunoClust")
immunoClust package PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews CellBasedAssays, Clustering, FlowCytometry, ImmunoOncology, SingleCell, Software
Version 1.35.1
In Bioconductor since BioC 3.1 (R-3.2) (9 years)
License Artistic-2.0
Depends R (>= 3.6), flowCore
Imports methods, stats, graphics, grid, lattice, grDevices
System Requirements
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Suggests BiocStyle, utils, testthat
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package immunoClust_1.35.1.tar.gz
Windows Binary immunoClust_1.35.1.zip (64-bit only)
macOS Binary (x86_64) immunoClust_1.35.1.tgz
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/immunoClust
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/immunoClust
Bioc Package Browser https://code.bioconductor.org/browse/immunoClust/
Package Short Url https://bioconductor.org/packages/immunoClust/
Package Downloads Report Download Stats