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hypeR

This is the development version of hypeR; for the stable release version, see hypeR.

An R Package For Geneset Enrichment Workflows


Bioconductor version: Development (3.19)

An R Package for Geneset Enrichment Workflows.

Author: Anthony Federico [aut, cre], Andrew Chen [aut], Stefano Monti [aut]

Maintainer: Anthony Federico <anfed at bu.edu>

Citation (from within R, enter citation("hypeR")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("hypeR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("hypeR")
hypeR HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews Annotation, GeneSetEnrichment, Pathways, Software
Version 2.1.0
In Bioconductor since BioC 3.9 (R-3.6) (5 years)
License GPL-3 + file LICENSE
Depends R (>= 3.6.0)
Imports ggplot2, ggforce, R6, magrittr, dplyr, purrr, stats, stringr, scales, rlang, httr, openxlsx, htmltools, reshape2, reactable, msigdbr, kableExtra, rmarkdown, igraph, visNetwork, shiny, BiocStyle
System Requirements
URL https://github.com/montilab/hypeR
Bug Reports https://github.com/montilab/hypeR/issues
See More
Suggests tidyverse, devtools, testthat, knitr
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package hypeR_2.1.0.tar.gz
Windows Binary hypeR_2.1.0.zip
macOS Binary (x86_64) hypeR_2.1.0.tgz
macOS Binary (arm64) hypeR_2.1.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/hypeR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/hypeR
Bioc Package Browser https://code.bioconductor.org/browse/hypeR/
Package Short Url https://bioconductor.org/packages/hypeR/
Package Downloads Report Download Stats