hca
This is the development version of hca; for the stable release version, see hca.
Exploring the Human Cell Atlas Data Coordinating Platform
DOI: 10.18129/B9.bioc.hca
Bioconductor version: Development (3.21)
This package provides users with the ability to query the Human Cell Atlas data repository for single-cell experiment data. The `projects()`, `files()`, `samples()` and `bundles()` functions retrieve summary information on each of these indexes; corresponding `*_details()` are available for individual entries of each index. File-based resources can be downloaded using `files_download()`. Advanced use of the package allows the user to page through large result sets, and to flexibly query the 'list-of-lists' structure representing query responses.
Author: Maya McDaniel [aut], Martin Morgan [aut, cre] (ORCID:
Maintainer: Martin Morgan <martin.morgan at roswellpark.org>
citation("hca")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("hca")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("hca")| Accessing Human Cell Atlas Data | HTML | R Script |
| Working With Human Cell Atlas Manifests | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | SingleCell, Software |
| Version | 1.15.0 |
| In Bioconductor since | BioC 3.13 (R-4.1) (3.5 years) |
| License | MIT + file LICENSE |
| Depends | R (>= 4.1) |
| Imports | httr, jsonlite, dplyr, tibble, tidyr, readr, BiocFileCache, tools, utils, digest, shiny, miniUI, DT |
| System Requirements | |
| URL |
See More
| Suggests | LoomExperiment, SummarizedExperiment, SingleCellExperiment, S4Vectors, methods, testthat (>= 3.0.0), knitr, rmarkdown, BiocStyle |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | hca_1.15.0.tar.gz |
| Windows Binary (x86_64) | hca_1.15.0.zip |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | hca_1.15.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/hca |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/hca |
| Bioc Package Browser | https://code.bioconductor.org/browse/hca/ |
| Package Short Url | https://bioconductor.org/packages/hca/ |
| Package Downloads Report | Download Stats |