ggtreeExtra

DOI: 10.18129/B9.bioc.ggtreeExtra    

This is the development version of ggtreeExtra; to use it, please install the devel version of Bioconductor.

An R Package To Add Geom Layers On Circular Or Other Layout Tree Of "ggtree"

Bioconductor version: Development (3.12)

'ggtreeExtra' extends the method for mapping and visualizing associated data on phylogenetic tree using 'ggtree'. These associated data can be mapped to circular layout, fan layout, or other layout tree built by 'ggtree' with the grammar of 'ggplot2'.

Author: Shuangbin Xu [aut, cre] , Guangchuang Yu [aut, ctb]

Maintainer: Shuangbin Xu <xshuangbin at 163.com>

Citation (from within R, enter citation("ggtreeExtra")):

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("ggtreeExtra")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ggtreeExtra")

 

HTML R Script ggtreeExtra
PDF   Reference Manual
Text   NEWS

Details

biocViews Annotation, Phylogenetics, Software, Visualization
Version 0.99.19
In Bioconductor since BioC 3.12 (R-4.0)
License GPL-3
Depends
Imports ggplot2, utils, rlang, ggnewscale, stats
LinkingTo
Suggests ggtree, treeio, ggstar, patchwork, knitr, rmarkdown, prettydoc, markdown
SystemRequirements
Enhances
URL https://github.com/YuLab-SMU/ggtreeExtra/
BugReports https://github.com/YuLab-SMU/ggtreeExtra/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ggtreeExtra_0.99.19.tar.gz
Windows Binary ggtreeExtra_0.99.19.zip
macOS 10.13 (High Sierra) ggtreeExtra_0.99.19.tgz
Source Repository git clone https://git.bioconductor.org/packages/ggtreeExtra
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ggtreeExtra
Package Short Url https://bioconductor.org/packages/ggtreeExtra/
Package Downloads Report Download Stats

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