ffpe

DOI: 10.18129/B9.bioc.ffpe  

This is the development version of ffpe; for the stable release version, see ffpe.

Quality assessment and control for FFPE microarray expression data

Bioconductor version: Development (3.18)

Identify low-quality data using metrics developed for expression data derived from Formalin-Fixed, Paraffin-Embedded (FFPE) data. Also a function for making Concordance at the Top plots (CAT-plots).

Author: Levi Waldron

Maintainer: Levi Waldron <lwaldron.research at gmail.com>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("ffpe")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual

Details

biocViews	GeneExpression, Microarray, QualityControl, Software
Version	1.45.0
In Bioconductor since	BioC 2.10 (R-2.15) (11 years)
License	GPL (>2)
Depends	R (>= 2.10.0), TTR, methods
Imports	Biobase, BiocGenerics, affy, lumi, methylumi, sfsmisc
LinkingTo
Suggests	genefilter, ffpeExampleData
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary	ffpe_1.45.0.zip
macOS Binary (x86_64)	ffpe_1.45.0.tgz
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/ffpe
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/ffpe
Bioc Package Browser	https://code.bioconductor.org/browse/ffpe/
Package Short Url	https://bioconductor.org/packages/ffpe/
Package Downloads Report	Download Stats