fdrame
This is the development version of fdrame; for the stable release version, see fdrame.
FDR adjustments of Microarray Experiments (FDR-AME)
Bioconductor version: Development (3.20)
This package contains two main functions. The first is fdr.ma which takes normalized expression data array, experimental design and computes adjusted p-values It returns the fdr adjusted p-values and plots, according to the methods described in (Reiner, Yekutieli and Benjamini 2002). The second, is fdr.gui() which creates a simple graphic user interface to access fdr.ma
Author: Yoav Benjamini, Effi Kenigsberg, Anat Reiner, Daniel Yekutieli
Maintainer: Effi Kenigsberg <effiken.fdrame at gmail.com>
citation("fdrame")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("fdrame")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("fdrame")
Annotation Overview | |
Reference Manual |
Details
biocViews | DifferentialExpression, Microarray, MultipleComparison, Software |
Version | 1.77.0 |
In Bioconductor since | BioC 1.7 (R-2.2) (19 years) |
License | GPL (>= 2) |
Depends | |
Imports | tcltk, graphics, grDevices, stats, utils |
System Requirements | |
URL |
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Depends On Me | |
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Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | fdrame_1.77.0.tar.gz |
Windows Binary | fdrame_1.77.0.zip |
macOS Binary (x86_64) | fdrame_1.77.0.tgz |
macOS Binary (arm64) | fdrame_1.77.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/fdrame |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/fdrame |
Bioc Package Browser | https://code.bioconductor.org/browse/fdrame/ |
Package Short Url | https://bioconductor.org/packages/fdrame/ |
Package Downloads Report | Download Stats |