eds
This is the development version of eds; for the stable release version, see eds.
eds: Low-level reader for Alevin EDS format
DOI: 10.18129/B9.bioc.eds
Bioconductor version: Development (3.21)
This packages provides a single function, readEDS. This is a low-level utility for reading in Alevin EDS format into R. This function is not designed for end-users but instead the package is predominantly for simplifying package dependency graph for other Bioconductor packages.
Author: Avi Srivastava [aut, cre], Michael Love [aut, ctb]
Maintainer: Avi Srivastava <asrivastava at cs.stonybrook.edu>
citation("eds")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("eds")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("eds")| eds: Low-level reader function for Alevin EDS format | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | GeneExpression, RNASeq, Sequencing, SingleCell, Software |
| Version | 1.9.0 |
| In Bioconductor since | BioC 3.16 (R-4.2) (2 years) |
| License | GPL-2 |
| Depends | Matrix |
| Imports | Rcpp |
| System Requirements | C++11 |
| URL | https://github.com/mikelove/eds |
See More
| Suggests | knitr, tximportData, testthat (>= 3.0.0) |
| Linking To | Rcpp |
| Enhances | |
| Depends On Me | |
| Imports Me | singleCellTK |
| Suggests Me | tximport |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | eds_1.9.0.tar.gz |
| Windows Binary (x86_64) | eds_1.9.0.zip (64-bit only) |
| macOS Binary (x86_64) | eds_1.9.0.tgz |
| macOS Binary (arm64) | eds_1.9.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/eds |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/eds |
| Bioc Package Browser | https://code.bioconductor.org/browse/eds/ |
| Package Short Url | https://bioconductor.org/packages/eds/ |
| Package Downloads Report | Download Stats |