chevreulPlot

This is the development version of chevreulPlot; to use it, please install the devel version of Bioconductor.

Plots used in the chevreulPlot package

Bioconductor version: Development (3.21)

Tools for plotting SingleCellExperiment objects in the chevreulPlot package. Includes functions for analysis and visualization of single-cell data. Supported by NIH grants R01CA137124 and R01EY026661 to David Cobrinik.

Author: Kevin Stachelek [aut, cre] (ORCID: ), Bhavana Bhat [aut]

Maintainer: Kevin Stachelek <kevin.stachelek at gmail.com>

Citation (from within R, enter citation("chevreulPlot")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("chevreulPlot")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("chevreulPlot")

Preprocessing	HTML	R Script
Visualization	HTML	R Script
Reference Manual	PDF
NEWS	Text
LICENSE	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	Coverage, DataImport, DimensionReduction, GeneExpression, Normalization, Preprocessing, QualityControl, RNASeq, Sequencing, SingleCell, Software, Transcription, Transcriptomics, Visualization
Version	0.99.34
In Bioconductor since	BioC 3.21 (R-4.5)
License	MIT + file LICENSE
Depends	R (>= 4.5.0), SingleCellExperiment, chevreulProcess
Imports	base, cluster, clustree, ComplexHeatmap(>= 2.5.4), circlize, dplyr, EnsDb.Hsapiens.v86, forcats, fs, ggplot2, grid, plotly, purrr, S4Vectors, scales, scater, scran, scuttle, stats, stringr, tibble, tidyr, utils, wiggleplotr(>= 1.13.1), tidyselect, patchwork
System Requirements
URL	https://github.com/whtns/chevreulPlot https://whtns.github.io/chevreulPlot/
Bug Reports	https://github.com/cobriniklab/chevreulPlot/issues

Suggests	BiocStyle, knitr, RefManageR, rmarkdown, testthat (>= 3.0.0)
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	chevreulPlot_0.99.34.tar.gz
Windows Binary (x86_64)	chevreulPlot_0.99.34.zip (64-bit only)
macOS Binary (x86_64)	chevreulPlot_0.99.34.tgz
macOS Binary (arm64)	chevreulPlot_0.99.34.tgz
Source Repository	git clone https://git.bioconductor.org/packages/chevreulPlot
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/chevreulPlot
Bioc Package Browser	https://code.bioconductor.org/browse/chevreulPlot/
Package Short Url	https://bioconductor.org/packages/chevreulPlot/
Package Downloads Report	Download Stats