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bioCancer

This is the development version of bioCancer; for the stable release version, see bioCancer.

Interactive Multi-Omics Cancers Data Visualization and Analysis


Bioconductor version: Development (3.19)

This package is a Shiny App to visualize and analyse interactively Multi-Assays of Cancer Genomic Data.

Author: Karim Mezhoud [aut, cre]

Maintainer: Karim Mezhoud <kmezhoud at gmail.com>

Citation (from within R, enter citation("bioCancer")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("bioCancer")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("bioCancer")
bioCancer: Interactive Multi-OMICS Cancers Data Visualization and Analysis HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews DataRepresentation, GUI, GeneExpression, GeneTarget, MultipleComparison, Network, Pathways, Reactome, Software, Visualization
Version 1.31.0
In Bioconductor since BioC 3.4 (R-3.3) (7.5 years)
License AGPL-3 | file LICENSE
Depends R (>= 3.6.0), radiant.data (>= 0.9.1), XML (>= 3.98)
Imports R.oo, R.methodsS3, httr, DT (>= 0.3), dplyr (>= 0.7.2), shiny (>= 1.0.5), AlgDesign (>= 1.1.7.3), import (>= 1.1.0), methods, AnnotationDbi, shinythemes, Biobase, geNetClassifier, org.Hs.eg.db, org.Bt.eg.db, DOSE, clusterProfiler, reactome.db, ReactomePA, DiagrammeR (<= 1.01), visNetwork, htmlwidgets, plyr, tibble, GO.db
System Requirements
URL https://kmezhoud.github.io/bioCancer/
Bug Reports https://github.com/kmezhoud/bioCancer/issues
See More
Suggests BiocStyle, prettydoc, rmarkdown, knitr, testthat (>= 0.10.0)
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package bioCancer_1.31.0.tar.gz
Windows Binary bioCancer_1.31.0.zip
macOS Binary (x86_64) bioCancer_1.31.0.tgz
macOS Binary (arm64) bioCancer_1.31.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/bioCancer
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/bioCancer
Bioc Package Browser https://code.bioconductor.org/browse/bioCancer/
Package Short Url https://bioconductor.org/packages/bioCancer/
Package Downloads Report Download Stats