|
|
|
|
|
|
|
This is the development version of arrayQualityMetrics; for the stable release version, see arrayQualityMetrics.
Bioconductor version: Development (3.18)
This package generates microarray quality metrics reports for data in Bioconductor microarray data containers (ExpressionSet, NChannelSet, AffyBatch). One and two color array platforms are supported.
Author: Audrey Kauffmann, Wolfgang Huber
Maintainer: Mike Smith <mike.smith at embl.de>
Citation (from within R,
enter citation("arrayQualityMetrics")
):
To install this package, start R (version "4.3") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager") # The following initializes usage of Bioc devel BiocManager::install(version='devel') BiocManager::install("arrayQualityMetrics")
For older versions of R, please refer to the appropriate Bioconductor release.
Reference Manual |
biocViews | Microarray, OneChannel, QualityControl, ReportWriting, Software, TwoChannel |
Version | 3.57.0 |
In Bioconductor since | BioC 2.1 (R-2.6) (15.5 years) |
License | LGPL (>= 2) |
Depends | |
Imports | affy, affyPLM(>= 1.27.3), beadarray, Biobase, genefilter, graphics, grDevices, grid, gridSVG (>= 1.4-3), Hmisc, hwriter, lattice, latticeExtra, limma, methods, RColorBrewer, setRNG, stats, utils, vsn(>= 3.23.3), XML, svglite |
LinkingTo | |
Suggests | ALLMLL, CCl4, BiocStyle, knitr |
SystemRequirements | |
Enhances | |
URL | |
BugReports | https://github.com/grimbough/arrayQualityMetrics/issues |
Depends On Me | maEndToEnd |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | |
Windows Binary | arrayQualityMetrics_3.57.0.zip (64-bit only) |
macOS Binary (x86_64) | arrayQualityMetrics_3.57.0.tgz |
macOS Binary (arm64) | |
Source Repository | git clone https://git.bioconductor.org/packages/arrayQualityMetrics |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/arrayQualityMetrics |
Bioc Package Browser | https://code.bioconductor.org/browse/arrayQualityMetrics/ |
Package Short Url | https://bioconductor.org/packages/arrayQualityMetrics/ |
Package Downloads Report | Download Stats |
Documentation »
Bioconductor
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations: