arrayQualityMetrics

DOI: 10.18129/B9.bioc.arrayQualityMetrics  

This is the development version of arrayQualityMetrics; for the stable release version, see arrayQualityMetrics.

Quality metrics report for microarray data sets

Bioconductor version: Development (3.18)

This package generates microarray quality metrics reports for data in Bioconductor microarray data containers (ExpressionSet, NChannelSet, AffyBatch). One and two color array platforms are supported.

Author: Audrey Kauffmann, Wolfgang Huber

Maintainer: Mike Smith <mike.smith at embl.de>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("arrayQualityMetrics")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual

Details

biocViews	Microarray, OneChannel, QualityControl, ReportWriting, Software, TwoChannel
Version	3.57.0
In Bioconductor since	BioC 2.1 (R-2.6) (15.5 years)
License	LGPL (>= 2)
Depends
Imports	affy, affyPLM(>= 1.27.3), beadarray, Biobase, genefilter, graphics, grDevices, grid, gridSVG (>= 1.4-3), Hmisc, hwriter, lattice, latticeExtra, limma, methods, RColorBrewer, setRNG, stats, utils, vsn(>= 3.23.3), XML, svglite
LinkingTo
Suggests	ALLMLL, CCl4, BiocStyle, knitr
SystemRequirements
Enhances
URL
BugReports	https://github.com/grimbough/arrayQualityMetrics/issues
Depends On Me	maEndToEnd
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary	arrayQualityMetrics_3.57.0.zip (64-bit only)
macOS Binary (x86_64)	arrayQualityMetrics_3.57.0.tgz
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/arrayQualityMetrics
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/arrayQualityMetrics
Bioc Package Browser	https://code.bioconductor.org/browse/arrayQualityMetrics/
Package Short Url	https://bioconductor.org/packages/arrayQualityMetrics/
Package Downloads Report	Download Stats