XDE
This is the development version of XDE; for the stable release version, see XDE.
XDE: a Bayesian hierarchical model for cross-study analysis of differential gene expression
DOI: 10.18129/B9.bioc.XDE
Bioconductor version: Development (3.21)
Multi-level model for cross-study detection of differential gene expression.
Author: R.B. Scharpf, G. Parmigiani, A.B. Nobel, and H. Tjelmeland
Maintainer: Robert Scharpf <rscharpf at jhsph.edu>
Citation (from within R, enter
citation("XDE")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("XDE")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("XDE")| XDE Vignette | R Script | |
| XdeParameterClass Vignette | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DifferentialExpression, Microarray, Software |
| Version | 2.53.0 |
| In Bioconductor since | BioC 2.2 (R-2.7) (16.5 years) |
| License | LGPL-2 |
| Depends | R (>= 2.10.0), Biobase(>= 2.5.5) |
| Imports | BiocGenerics, genefilter, graphics, grDevices, gtools, methods, stats, utils, mvtnorm, RColorBrewer, GeneMeta, siggenes |
| System Requirements | |
| URL |
See More
| Suggests | MASS, RUnit |
| Linking To | |
| Enhances | coda |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | XDE_2.53.0.tar.gz |
| Windows Binary (x86_64) | XDE_2.53.0.zip (64-bit only) |
| macOS Binary (x86_64) | XDE_2.53.0.tgz |
| macOS Binary (arm64) | XDE_2.53.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/XDE |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/XDE |
| Bioc Package Browser | https://code.bioconductor.org/browse/XDE/ |
| Package Short Url | https://bioconductor.org/packages/XDE/ |
| Package Downloads Report | Download Stats |