Wrench
This is the development version of Wrench; for the stable release version, see Wrench.
Wrench normalization for sparse count data
Bioconductor version: Development (3.20)
Wrench is a package for normalization sparse genomic count data, like that arising from 16s metagenomic surveys.
Author: Senthil Kumar Muthiah [aut], Hector Corrada Bravo [aut, cre]
Maintainer: Hector Corrada Bravo <hcorrada at gmail.com>
Citation (from within R, enter
citation("Wrench")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("Wrench")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("Wrench")
Wrench | HTML | R Script |
Reference Manual |
Details
biocViews | Normalization, Sequencing, Software |
Version | 1.23.0 |
In Bioconductor since | BioC 3.8 (R-3.5) (6 years) |
License | Artistic-2.0 |
Depends | R (>= 3.5.0) |
Imports | limma, matrixStats, locfit, stats, graphics |
System Requirements | |
URL | https://github.com/HCBravoLab/Wrench |
Bug Reports | https://github.com/HCBravoLab/Wrench/issues |
See More
Suggests | knitr, rmarkdown, metagenomeSeq, DESeq2, edgeR |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | metagenomeSeq |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | Wrench_1.23.0.tar.gz |
Windows Binary | Wrench_1.23.0.zip |
macOS Binary (x86_64) | Wrench_1.23.0.tgz |
macOS Binary (arm64) | Wrench_1.23.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/Wrench |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/Wrench |
Bioc Package Browser | https://code.bioconductor.org/browse/Wrench/ |
Package Short Url | https://bioconductor.org/packages/Wrench/ |
Package Downloads Report | Download Stats |