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SpeCond

This is the development version of SpeCond; for the stable release version, see SpeCond.

Condition specific detection from expression data


Bioconductor version: Development (3.19)

This package performs a gene expression data analysis to detect condition-specific genes. Such genes are significantly up- or down-regulated in a small number of conditions. It does so by fitting a mixture of normal distributions to the expression values. Conditions can be environmental conditions, different tissues, organs or any other sources that you wish to compare in terms of gene expression.

Author: Florence Cavalli

Maintainer: Florence Cavalli <florence at ebi.ac.uk>

Citation (from within R, enter citation("SpeCond")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("SpeCond")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SpeCond")
SpeCond PDF R Script
Reference Manual PDF

Details

biocViews Clustering, DifferentialExpression, Microarray, MultipleComparison, ReportWriting, Software
Version 1.57.0
In Bioconductor since BioC 2.5 (R-2.10) (14.5 years)
License LGPL (>=2)
Depends R (>= 2.10.0), mclust (>= 3.3.1), Biobase(>= 1.15.13), fields, hwriter (>= 1.1), RColorBrewer, methods
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package SpeCond_1.57.0.tar.gz
Windows Binary SpeCond_1.57.0.zip
macOS Binary (x86_64) SpeCond_1.57.0.tgz
macOS Binary (arm64) SpeCond_1.57.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/SpeCond
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/SpeCond
Bioc Package Browser https://code.bioconductor.org/browse/SpeCond/
Package Short Url https://bioconductor.org/packages/SpeCond/
Package Downloads Report Download Stats