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STRINGdb

This is the development version of STRINGdb; for the stable release version, see STRINGdb.

STRINGdb - Protein-Protein Interaction Networks and Functional Enrichment Analysis


Bioconductor version: Development (3.19)

The STRINGdb package provides a R interface to the STRING protein-protein interactions database (https://string-db.org).

Author: Andrea Franceschini <andrea.franceschini at isb-sib.ch>

Maintainer: Damian Szklarczyk <damian.szklarczyk at imls.uzh.ch>

Citation (from within R, enter citation("STRINGdb")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("STRINGdb")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("STRINGdb")
STRINGdb Vignette PDF R Script
Reference Manual PDF

Details

biocViews Network, Software
Version 2.15.0
In Bioconductor since BioC 2.13 (R-3.0) (10.5 years)
License GPL-2
Depends R (>= 2.14.0)
Imports png, sqldf, plyr, igraph, RCurl, methods, RColorBrewer, gplots, hash, plotrix
System Requirements
URL
See More
Suggests RUnit, BiocGenerics
Linking To
Enhances
Depends On Me PPInfer
Imports Me IMMAN, netZooR, pwOmics, RITAN, TDbasedUFEadv, XINA
Suggests Me epiNEM, GeneNetworkBuilder, martini, netSmooth, PCAN
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package STRINGdb_2.15.0.tar.gz
Windows Binary STRINGdb_2.15.0.zip
macOS Binary (x86_64) STRINGdb_2.15.0.tgz
macOS Binary (arm64) STRINGdb_2.15.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/STRINGdb
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/STRINGdb
Bioc Package Browser https://code.bioconductor.org/browse/STRINGdb/
Package Short Url https://bioconductor.org/packages/STRINGdb/
Package Downloads Report Download Stats