Omixer
This is the development version of Omixer; for the stable release version, see Omixer.
Omixer: multivariate and reproducible sample randomization to proactively counter batch effects in omics studies
Bioconductor version: Development (3.21)
Omixer - an Bioconductor package for multivariate and reproducible sample randomization, which ensures optimal sample distribution across batches with well-documented methods. It outputs lab-friendly sample layouts, reducing the risk of sample mixups when manually pipetting randomized samples.
Author: Lucy Sinke [cre, aut]
Maintainer: Lucy Sinke <l.j.sinke at lumc.nl>
citation("Omixer")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("Omixer")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("Omixer")| my-vignette | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | DataRepresentation, ExperimentalDesign, QualityControl, Software, Visualization |
| Version | 1.17.0 |
| In Bioconductor since | BioC 3.12 (R-4.0) (4 years) |
| License | MIT + file LICENSE |
| Depends | R (>= 4.0.0) |
| Imports | dplyr, ggplot2, forcats, tibble, gridExtra, magrittr, readr, tidyselect, grid, stats, stringr |
| System Requirements | |
| URL | |
| Bug Reports | https://github.com/molepi/Omixer/issues |
See More
| Suggests | knitr, rmarkdown, BiocStyle, magick, testthat |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | Omixer_1.17.0.tar.gz |
| Windows Binary (x86_64) | Omixer_1.17.0.zip (64-bit only) |
| macOS Binary (x86_64) | Omixer_1.17.0.tgz |
| macOS Binary (arm64) | Omixer_1.17.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/Omixer |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/Omixer |
| Bioc Package Browser | https://code.bioconductor.org/browse/Omixer/ |
| Package Short Url | https://bioconductor.org/packages/Omixer/ |
| Package Downloads Report | Download Stats |