MOGAMUN
This is the development version of MOGAMUN; for the stable release version, see MOGAMUN.
MOGAMUN: A Multi-Objective Genetic Algorithm to Find Active Modules in Multiplex Biological Networks
Bioconductor version: Development (3.21)
MOGAMUN is a multi-objective genetic algorithm that identifies active modules in a multiplex biological network. This allows analyzing different biological networks at the same time. MOGAMUN is based on NSGA-II (Non-Dominated Sorting Genetic Algorithm, version II), which we adapted to work on networks.
Author: Elva-María Novoa-del-Toro [aut, cre] (ORCID:
Maintainer: Elva-María Novoa-del-Toro <elvanov at hotmail.com>
citation("MOGAMUN")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("MOGAMUN")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MOGAMUN")| Finding active modules with MOGAMUN | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | BiomedicalInformatics, Clustering, DifferentialExpression, GraphAndNetwork, Network, Software, SystemsBiology, Transcriptomics |
| Version | 1.17.0 |
| In Bioconductor since | BioC 3.12 (R-4.0) (4 years) |
| License | GPL-3 + file LICENSE |
| Depends | |
| Imports | stats, utils, RCy3, stringr, graphics, grDevices, RUnit, BiocParallel, igraph |
| System Requirements | |
| URL | https://github.com/elvanov/MOGAMUN |
See More
| Suggests | knitr, markdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | MOGAMUN_1.17.0.tar.gz |
| Windows Binary (x86_64) | MOGAMUN_1.17.0.zip (64-bit only) |
| macOS Binary (x86_64) | MOGAMUN_1.17.0.tgz |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/MOGAMUN |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/MOGAMUN |
| Bioc Package Browser | https://code.bioconductor.org/browse/MOGAMUN/ |
| Package Short Url | https://bioconductor.org/packages/MOGAMUN/ |
| Package Downloads Report | Download Stats |