MEAT

DOI: 10.18129/B9.bioc.MEAT    

This is the development version of MEAT; for the stable release version, see MEAT.

Muscle Epigenetic Age Test

Bioconductor version: Development (3.12)

This package estimates epigenetic age in skeletal muscle, using DNA methylation data generated with the Illumina Infinium technology (HM27, HM450 and HMEPIC).

Author: Sarah Voisin [aut, cre] , Steve Horvath [ctb]

Maintainer: Sarah Voisin <sarah.voisin.aeris at gmail.com>

Citation (from within R, enter citation("MEAT")):

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("MEAT")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MEAT")

 

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PDF   Reference Manual
Text   NEWS
Text   LICENSE

Details

biocViews BiomedicalInformatics, DNAMethylation, Epigenetics, MethylationArray, Microarray, Normalization, Preprocessing, Software
Version 1.1.3
In Bioconductor since BioC 3.11 (R-4.0) (< 6 months)
License MIT + file LICENSE
Depends R (>= 4.0)
Imports impute(>= 1.58), dynamicTreeCut (>= 1.63), glmnet (>= 2.0), grDevices, graphics, stats, utils, stringr, tibble, RPMM (>= 1.25), minfi(>= 1.30), dplyr, SummarizedExperiment, wateRmelon
LinkingTo
Suggests knitr, rmarkdown, BiocStyle, testthat (>= 2.1.0)
SystemRequirements
Enhances
URL https://github.com/sarah-voisin/MEAT
BugReports https://github.com/sarah-voisin/MEAT/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MEAT_1.1.3.tar.gz
Windows Binary MEAT_1.1.3.zip
macOS 10.13 (High Sierra) MEAT_1.1.3.tgz
Source Repository git clone https://git.bioconductor.org/packages/MEAT
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MEAT
Package Short Url https://bioconductor.org/packages/MEAT/
Package Downloads Report Download Stats

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