MEAT

DOI: 10.18129/B9.bioc.MEAT  

This is the development version of MEAT; for the stable release version, see MEAT.

Muscle Epigenetic Age Test

Bioconductor version: Development (3.18)

This package estimates epigenetic age in skeletal muscle, using DNA methylation data generated with the Illumina Infinium technology (HM27, HM450 and HMEPIC).

Author: Sarah Voisin [aut, cre] , Steve Horvath [ctb]

Maintainer: Sarah Voisin <sarah.voisin.aeris at gmail.com>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("MEAT")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual

Details

biocViews	BiomedicalInformatics, DNAMethylation, Epigenetics, MethylationArray, Microarray, Normalization, Preprocessing, Software
Version	1.13.0
In Bioconductor since	BioC 3.11 (R-4.0) (3 years)
License	MIT + file LICENSE
Depends	R (>= 4.0)
Imports	impute(>= 1.58), dynamicTreeCut (>= 1.63), glmnet (>= 2.0), grDevices, graphics, stats, utils, stringr, tibble, RPMM (>= 1.25), minfi(>= 1.30), dplyr, SummarizedExperiment, wateRmelon
LinkingTo
Suggests	knitr, markdown, rmarkdown, BiocStyle, testthat (>= 2.1.0)
SystemRequirements
Enhances
URL	https://github.com/sarah-voisin/MEAT
BugReports	https://github.com/sarah-voisin/MEAT/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary	MEAT_1.13.0.zip
macOS Binary (x86_64)	MEAT_1.13.0.tgz
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/MEAT
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/MEAT
Bioc Package Browser	https://code.bioconductor.org/browse/MEAT/
Package Short Url	https://bioconductor.org/packages/MEAT/
Package Downloads Report	Download Stats