MEAT

DOI: 10.18129/B9.bioc.MEAT  

This is the development version of MEAT; for the stable release version, see MEAT.

Muscle Epigenetic Age Test

Bioconductor version: Development (3.18)

This package estimates epigenetic age in skeletal muscle, using DNA methylation data generated with the Illumina Infinium technology (HM27, HM450 and HMEPIC).

Author: Sarah Voisin [aut, cre] , Steve Horvath [ctb]

Maintainer: Sarah Voisin <sarah.voisin.aeris at gmail.com>

Citation (from within R, enter citation("MEAT")):

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("MEAT")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF   Reference Manual

Details

biocViews BiomedicalInformatics, DNAMethylation, Epigenetics, MethylationArray, Microarray, Normalization, Preprocessing, Software
Version 1.13.0
In Bioconductor since BioC 3.11 (R-4.0) (3 years)
License MIT + file LICENSE
Depends R (>= 4.0)
Imports impute(>= 1.58), dynamicTreeCut (>= 1.63), glmnet (>= 2.0), grDevices, graphics, stats, utils, stringr, tibble, RPMM (>= 1.25), minfi(>= 1.30), dplyr, SummarizedExperiment, wateRmelon
LinkingTo
Suggests knitr, markdown, rmarkdown, BiocStyle, testthat (>= 2.1.0)
SystemRequirements
Enhances
URL https://github.com/sarah-voisin/MEAT
BugReports https://github.com/sarah-voisin/MEAT/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary MEAT_1.13.0.zip
macOS Binary (x86_64) MEAT_1.13.0.tgz
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/MEAT
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MEAT
Bioc Package Browser https://code.bioconductor.org/browse/MEAT/
Package Short Url https://bioconductor.org/packages/MEAT/
Package Downloads Report Download Stats

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