MACSQuantifyR

This is the development version of MACSQuantifyR; for the stable release version, see MACSQuantifyR.

Fast treatment of MACSQuantify FACS data


Bioconductor version: Development (3.21)

Automatically process the metadata of MACSQuantify FACS sorter. It runs multiple modules: i) imports of raw file and graphical selection of duplicates in well plate, ii) computes statistics on data and iii) can compute combination index.

Author: Raphaël Bonnet [aut, cre], Marielle Nebout [dtc],Giulia Biondani [dtc], Jean-François Peyron[aut,ths], Inserm [fnd]

Maintainer: Raphaël Bonnet <raphael.bonnet at univ-cotedazur.fr>

Citation (from within R, enter citation("MACSQuantifyR")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("MACSQuantifyR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MACSQuantifyR")
MACSQuantifyR_quick_introduction HTML R Script
MACSQuantifyR_simple_pipeline HTML R Script
MACSQuantifyR_step_by_step_analysis HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews DataImport, DataRepresentation, FlowCytometry, GUI, Normalization, Preprocessing, Software
Version 1.21.0
In Bioconductor since BioC 3.10 (R-3.6) (5 years)
License Artistic-2.0
Depends
Imports readxl, graphics, tools, utils, grDevices, ggplot2, ggrepel, methods, stats, latticeExtra, lattice, rmarkdown, png, grid, gridExtra, prettydoc, rvest, xml2
System Requirements
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See More
Suggests knitr, testthat, R.utils, spelling
Linking To
Enhances
Depends On Me
Imports Me
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MACSQuantifyR_1.21.0.tar.gz
Windows Binary (x86_64) MACSQuantifyR_1.21.0.zip (64-bit only)
macOS Binary (x86_64) MACSQuantifyR_1.21.0.tgz
macOS Binary (arm64) MACSQuantifyR_1.21.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/MACSQuantifyR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MACSQuantifyR
Bioc Package Browser https://code.bioconductor.org/browse/MACSQuantifyR/
Package Short Url https://bioconductor.org/packages/MACSQuantifyR/
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