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GloScope

This is the development version of GloScope; for the stable release version, see GloScope.

Population-level Representation on scRNA-Seq data


Bioconductor version: Development (3.19)

This package aims at representing and summarizing the entire single-cell profile of a sample. It allows researchers to perform important bioinformatic analyses at the sample-level such as visualization and quality control. The main functions Estimate sample distribution and calculate statistical divergence among samples, and visualize the distance matrix through MDS plots.

Author: William Torous [aut, cre] , Hao Wang [aut] , Elizabeth Purdom [aut], Boying Gong [aut]

Maintainer: William Torous <wtorous at berkeley.edu>

Citation (from within R, enter citation("GloScope")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("GloScope")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GloScope")
GloScope HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews DataRepresentation, QualityControl, RNASeq, Sequencing, SingleCell, Software
Version 1.1.0
In Bioconductor since BioC 3.18 (R-4.3) (< 6 months)
License Artistic-2.0
Depends R (>= 4.3.0)
Imports utils, stats, MASS, mclust, ggplot2, RANN, FNN, BiocParallel, mvnfast, SingleCellExperiment, rlang
System Requirements
URL
Bug Reports https://github.com/epurdom/GloScope/issues
See More
Suggests BiocStyle, testthat (>= 3.0.0), knitr, rmarkdown, zellkonverter
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package GloScope_1.1.0.tar.gz
Windows Binary GloScope_1.1.0.zip (64-bit only)
macOS Binary (x86_64) GloScope_1.1.0.tgz
macOS Binary (arm64) GloScope_1.1.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/GloScope
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/GloScope
Bioc Package Browser https://code.bioconductor.org/browse/GloScope/
Package Short Url https://bioconductor.org/packages/GloScope/
Package Downloads Report Download Stats