GeneRegionScan
This is the development version of GeneRegionScan; for the stable release version, see GeneRegionScan.
GeneRegionScan
Bioconductor version: Development (3.20)
A package with focus on analysis of discrete regions of the genome. This package is useful for investigation of one or a few genes using Affymetrix data, since it will extract probe level data using the Affymetrix Power Tools application and wrap these data into a ProbeLevelSet. A ProbeLevelSet directly extends the expressionSet, but includes additional information about the sequence of each probe and the probe set it is derived from. The package includes a number of functions used for plotting these probe level data as a function of location along sequences of mRNA-strands. This can be used for analysis of variable splicing, and is especially well suited for use with exon-array data.
Author: Lasse Folkersen, Diego Diez
Maintainer: Lasse Folkersen <lasfol at cbs.dtu.dk>
citation("GeneRegionScan")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("GeneRegionScan")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GeneRegionScan")
GeneRegionScan | R Script | |
Reference Manual |
Details
biocViews | DataImport, Microarray, OneChannel, SNP, Software, Visualization |
Version | 1.61.0 |
In Bioconductor since | BioC 2.4 (R-2.9) (15.5 years) |
License | GPL (>= 2) |
Depends | methods, Biobase(>= 2.5.5), Biostrings |
Imports | S4Vectors(>= 0.9.25), Biobase(>= 2.5.5), affxparser, RColorBrewer, Biostrings |
System Requirements | |
URL |
See More
Suggests | BSgenome, affy, AnnotationDbi |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | GeneRegionScan_1.61.0.tar.gz |
Windows Binary | GeneRegionScan_1.61.0.zip |
macOS Binary (x86_64) | GeneRegionScan_1.61.0.tgz |
macOS Binary (arm64) | GeneRegionScan_1.61.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/GeneRegionScan |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/GeneRegionScan |
Bioc Package Browser | https://code.bioconductor.org/browse/GeneRegionScan/ |
Package Short Url | https://bioconductor.org/packages/GeneRegionScan/ |
Package Downloads Report | Download Stats |