GSALightning
This is the development version of GSALightning; for the stable release version, see GSALightning.
Fast Permutation-based Gene Set Analysis
Bioconductor version: Development (3.21)
GSALightning provides a fast implementation of permutation-based gene set analysis for two-sample problem. This package is particularly useful when testing simultaneously a large number of gene sets, or when a large number of permutations is necessary for more accurate p-values estimation.
Author: Billy Heung Wing Chang
Maintainer: Billy Heung Wing Chang <billyheungwing at gmail.com>
citation("GSALightning")
):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("GSALightning")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GSALightning")
Vignette Title | HTML | R Script |
Reference Manual | ||
NEWS | Text | |
LICENSE | Text |
Details
biocViews | BiologicalQuestion, DifferentialExpression, GeneExpression, GeneSetEnrichment, Software, Transcription |
Version | 1.35.0 |
In Bioconductor since | BioC 3.3 (R-3.3) (8.5 years) |
License | GPL (>=2) |
Depends | R (>= 3.3.0) |
Imports | Matrix, data.table, stats |
System Requirements | |
URL | https://github.com/billyhw/GSALightning |
Bug Reports | https://github.com/billyhw/GSALightning/issues |
See More
Suggests | knitr, rmarkdown |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | GSALightning_1.35.0.tar.gz |
Windows Binary (x86_64) | |
macOS Binary (x86_64) | |
macOS Binary (arm64) | |
Source Repository | git clone https://git.bioconductor.org/packages/GSALightning |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/GSALightning |
Bioc Package Browser | https://code.bioconductor.org/browse/GSALightning/ |
Package Short Url | https://bioconductor.org/packages/GSALightning/ |
Package Downloads Report | Download Stats |