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This is the development version of GSALightning; for the stable release version, see GSALightning.

Fast Permutation-based Gene Set Analysis

Bioconductor version: Development (3.19)

GSALightning provides a fast implementation of permutation-based gene set analysis for two-sample problem. This package is particularly useful when testing simultaneously a large number of gene sets, or when a large number of permutations is necessary for more accurate p-values estimation.

Author: Billy Heung Wing Chang

Maintainer: Billy Heung Wing Chang <billyheungwing at>

Citation (from within R, enter citation("GSALightning")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))

# The following initializes usage of Bioc devel


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biocViews BiologicalQuestion, DifferentialExpression, GeneExpression, GeneSetEnrichment, Software, Transcription
Version 1.31.0
In Bioconductor since BioC 3.3 (R-3.3) (8 years)
License GPL (>=2)
Depends R (>= 3.3.0)
Imports Matrix, data.table, stats
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Source Package GSALightning_1.31.0.tar.gz
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macOS Binary (x86_64) GSALightning_1.31.0.tgz
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