GRENITS
This is the development version of GRENITS; for the stable release version, see GRENITS.
Gene Regulatory Network Inference Using Time Series
Bioconductor version: Development (3.21)
The package offers four network inference statistical models using Dynamic Bayesian Networks and Gibbs Variable Selection: a linear interaction model, two linear interaction models with added experimental noise (Gaussian and Student distributed) for the case where replicates are available and a non-linear interaction model.
Author: Edward Morrissey
Maintainer: Edward Morrissey <edward.morrissey at gmail.com>
citation("GRENITS")
):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("GRENITS")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GRENITS")
GRENITS | R Script | |
Reference Manual | ||
NEWS | Text |
Details
biocViews | Bayesian, GeneExpression, GeneRegulation, GraphAndNetwork, Network, NetworkInference, Software, TimeCourse |
Version | 1.59.0 |
In Bioconductor since | BioC 2.9 (R-2.14) (13 years) |
License | GPL (>= 2) |
Depends | R (>= 2.12.0), Rcpp (>= 0.8.6), RcppArmadillo (>= 0.2.8), ggplot2 (>= 0.9.0) |
Imports | graphics, grDevices, reshape2, stats, utils |
System Requirements | |
URL |
See More
Suggests | network |
Linking To | Rcpp, RcppArmadillo |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | GRENITS_1.59.0.tar.gz |
Windows Binary (x86_64) | |
macOS Binary (x86_64) | |
macOS Binary (arm64) | |
Source Repository | git clone https://git.bioconductor.org/packages/GRENITS |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/GRENITS |
Bioc Package Browser | https://code.bioconductor.org/browse/GRENITS/ |
Package Short Url | https://bioconductor.org/packages/GRENITS/ |
Package Downloads Report | Download Stats |