GLAD

DOI: 10.18129/B9.bioc.GLAD    

This is the development version of GLAD; for the stable release version, see GLAD.

Gain and Loss Analysis of DNA

Bioconductor version: Development (3.12)

Analysis of array CGH data : detection of breakpoints in genomic profiles and assignment of a status (gain, normal or loss) to each chromosomal regions identified.

Author: Philippe Hupe

Maintainer: Philippe Hupe <glad at curie.fr>

Citation (from within R, enter citation("GLAD")):

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("GLAD")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GLAD")

 

PDF R Script GLAD
PDF   Reference Manual

Details

biocViews CopyNumberVariation, Microarray, Software
Version 2.53.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 15.5 years)
License GPL-2
Depends R (>= 2.10)
Imports aws
LinkingTo
Suggests
SystemRequirements gsl. Note: users should have GSL installed. Windows users: 'consult the README file available in the inst directory of the source distribution for necessary configuration instructions'.
Enhances
URL http://bioinfo.curie.fr
Depends On Me ADaCGH2, ITALICS, seqCNA
Imports Me ITALICS, MANOR, snapCGH
Suggests Me RnBeads
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package GLAD_2.53.0.tar.gz
Windows Binary GLAD_2.53.0.zip
macOS 10.13 (High Sierra) GLAD_2.53.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/GLAD
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/GLAD
Package Short Url https://bioconductor.org/packages/GLAD/
Package Downloads Report Download Stats

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